New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	2042137 =	53 (0.930)	6 (0.120)	5/132	6.0	11.3%	coding (684/1428 nt)	wzx	O antigen translocase (Wzx)
	?	REL606	2042551 =	48 (0.960)					coding (270/1428 nt)	wzx	O antigen translocase (Wzx)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAAT  >  REL606/2042065‑2042212                                                                         |                                                                            gCTAGAGATCTGTTTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGatat                                                                          >  1:701419/1‑76 (MQ=255) gCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGatat                                                                          >  1:701425/1‑76 (MQ=255)  cTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGatata                                                                         >  1:1302778/1‑76 (MQ=255)  cTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGatata                                                                         <  1:646786/76‑1 (MQ=255)    agagATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGatatata                                                                       <  1:1577890/76‑1 (MQ=255)       gaTCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATAttt                                                                    <  2:235867/76‑1 (MQ=255)         tCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGa                                                                  <  1:1278099/76‑1 (MQ=255)         tCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGa                                                                  >  1:1731459/1‑76 (MQ=255)             aTTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATaa                                                              <  1:1178268/76‑1 (MQ=255)             aTTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATaa                                                              <  2:1378992/76‑1 (MQ=255)              ttAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATaaa                                                             >  2:1532554/1‑76 (MQ=255)              ttAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATaaa                                                             >  2:156355/1‑76 (MQ=255)                aGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATaaaaa                                                           >  1:249582/1‑76 (MQ=255)                  ccTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGc                                                         <  1:1754365/76‑1 (MQ=255)                       gtAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCaa                                                    <  2:1810910/76‑1 (MQ=255)                        tAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAg                                                   >  1:97348/1‑76 (MQ=255)                        tAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAg                                                   >  2:340352/1‑76 (MQ=255)                          aaTTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTa                                                 <  2:258201/76‑1 (MQ=255)                               cccTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCa                                            <  2:1031258/76‑1 (MQ=255)                                ccTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAg                                           <  2:1731097/76‑1 (MQ=255)                                  tACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCa                                         >  1:543681/1‑76 (MQ=255)                                   aCAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCaa                                        >  1:406068/1‑76 (MQ=255)                                      aGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTa                                     >  1:156608/1‑76 (MQ=255)                                       gCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCCGCAATTAg                                    >  2:191319/1‑76 (MQ=255)                                        cTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGt                                   >  1:1527434/1‑76 (MQ=255)                                        cTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGt                                   <  1:1317246/76‑1 (MQ=255)                                            ggtgTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGt                               <  1:134911/76‑1 (MQ=255)                                             gtgtAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGtt                              >  2:59959/1‑76 (MQ=255)                                             gtgtAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGtt                              <  1:656104/76‑1 (MQ=255)                                             gtgtAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGtt                              >  2:59984/1‑76 (MQ=255)                                              tgtAAAAAATTTTCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTa                             >  1:1721539/1‑76 (MQ=255)                                              tgtAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTa                             >  1:1146140/1‑76 (MQ=255)                                              tgtAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTa                             >  1:1045267/1‑76 (MQ=255)                                              tgtAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTa                             <  1:35505/76‑1 (MQ=255)                                              tgtAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTa                             <  1:239984/76‑1 (MQ=255)                                              tgtAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTa                             >  1:1721569/1‑76 (MQ=255)                                              tgtAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTa                             >  1:1721558/1‑76 (MQ=255)                                               gtAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTAc                            >  1:361702/1‑76 (MQ=255)                                                    aaaTTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTa                       <  2:16371/76‑1 (MQ=255)                                                      aTTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTaaa                     <  2:231604/76‑1 (MQ=255)                                                        ttCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATg                   <  2:1302778/76‑1 (MQ=255)                                                            cTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGaaaa               >  1:1411466/1‑76 (MQ=255)                                                              ataATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATa             <  1:866033/76‑1 (MQ=255)                                                              ataATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATa             >  2:591846/1‑76 (MQ=255)                                                              ataATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATa             >  2:1617064/1‑76 (MQ=255)                                                              ataATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATa             <  1:869903/76‑1 (MQ=255)                                                               taattaatTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAg            <  1:258082/76‑1 (MQ=255)                                                                aattaattGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGc           <  1:1457324/76‑1 (MQ=255)                                                                aattaattGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCCAAATGAAAATAGc           <  1:1457316/76‑1 (MQ=255)                                                                aattaattGATATATATGTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGc           <  1:1457303/76‑1 (MQ=255)                                                                  ttaattGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCtt         >  2:744684/1‑76 (MQ=255)                                                                        gATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGaa   >  2:881884/1‑76 (MQ=255)                                                                        gATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGaa   >  2:930919/1‑76 (MQ=255)                                                                         atatatatTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAAt  >  1:1754940/1‑76 (MQ=255)                                                                         |                                                                            GCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAAT  >  REL606/2042065‑2042212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.