New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	2040012 =	61 (1.000)	12 (0.220)	9/132	4.5	15.4%	coding (117/438 nt)	vioB	VioB, involved in dTDP‑N‑acetylviosamine synthesis
	?	REL606	2040259 =	78 (1.450)					intergenic (‑131/+12)	vioB/vioA	VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGATTATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTCATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2040093‑2040012 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttcatctAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATA  >  REL606/2040259‑2040333                                                                                                                                                               CGATTATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATT                                                                                   >  1:1928546/1‑76  GATTATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTT                                                                                  <  1:544446/76‑1  GATTATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTT                                                                                  <  1:1300008/76‑1   ATTATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTC                                                                                 >  2:1087103/1‑76     TATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTCAT                                                                               >  1:967364/1‑76     TATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTCAT                                                                               >  1:967383/1‑76          TCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTCATCTAAA                                                                          <  2:1201238/76‑1           CATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTCATCTAAAT                                                                         <  2:860404/76‑1            ATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTCATTTAAATc                                                                        <  2:589258/76‑2            ATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTCATCTAAATA                                                                        <  2:1689939/76‑1             TATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTCATCTAAATAG                                                                       <  2:1350001/76‑1             TATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTCATCTAAATAG                                                                       <  2:1031292/76‑1              ATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTCATCTAAATAGG                                                                      <  2:877375/76‑1                       TATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTCATCTAAATAGGCCATATCAC                                                             <  2:1771113/76‑1                         TTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTCATCTAAATAGGCCATATCACAT                                                           <  2:1116067/76‑1                         TTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTCATCTAAATAGGCCATATCACAT                                                           <  2:1116087/76‑1                          TCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTCATCTAAATAGGCCATATCACATC                                                          <  2:299049/76‑1                                 TTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTCATCTAAATAGGCCATATCACATCTTACCCA                                                   <  2:242515/76‑1                                                                       ttgATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTT             >  2:1203691/4‑76                                                                            TTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATC        <  1:735996/76‑1                                                                            TTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATC        <  1:589258/76‑1                                                                            TTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATC        <  1:457850/76‑1                                                                             TCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCT       <  1:340886/76‑1                                                                              CATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTG      <  2:1768755/76‑1                                                                                TCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTA    <  1:358831/76‑1                                                                                TCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTA    <  1:1713010/76‑1                                                                                 CTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTAT   <  1:979534/76‑1                                                                                  TAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATA  <  2:3378/76‑1                                                                                                                                                               CGATTATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTCATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2040093‑2040012 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttcatctAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATA  >  REL606/2040259‑2040333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.