Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 3,733,719 | 0 | C | G | 21.4% | 111.8 / 13.8 | 43 | G63G (GGC→GGG) | gumD | ADP‑L‑glycero‑D‑mannoheptose‑6‑epimerase, NAD(P)‑binding |
Reads supporting (aligned to +/- strand): ref base C (1/32); new base G (9/0); total (11/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.24e-08 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
TGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCAAGTA > REL606/3733647‑3733793 | tgtgAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGaa < 2:907585/76‑1 (MQ=255) gtgAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAag < 1:468394/76‑1 (MQ=255) gtgAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAag < 1:1348093/76‑1 (MQ=255) aaCCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGagagg > 2:567616/1‑75 (MQ=255) ccTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTc > 1:1907260/1‑76 (MQ=255) ccTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTc < 2:1901394/76‑1 (MQ=255) cTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGTTCg > 1:1520562/1‑76 (MQ=255) ggtggATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGc < 1:206700/76‑1 (MQ=255) gtggATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCg < 1:1204727/76‑1 (MQ=255) ggATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGAt < 2:1213878/76‑1 (MQ=255) ggATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGAt < 2:1104811/76‑1 (MQ=255) aTCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTTGGCGGTgg > 2:1402760/1‑75 (MQ=255) tCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTc < 2:1266014/76‑1 (MQ=255) tGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTGGGCGGTGTCgg > 2:934826/1‑75 (MQ=255) gAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGaa < 2:447118/76‑1 (MQ=255) aaTATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGAGAAGAGTTCGGCGATGTCGAAg > 2:106262/1‑76 (MQ=255) atatCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGc < 1:1896698/76‑1 (MQ=255) atCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGAAGAGGTCGGCGGTGTCGAAGCgc > 1:1360682/1‑75 (MQ=255) gCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGAttt < 2:1270860/76‑1 (MQ=255) cAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGGGGTTGGCGCTGTTGCAGGGActtt > 2:8017/1‑76 (MQ=255) cAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTCGGCGGTGGCGAAGGGAtttt > 1:1828000/1‑76 (MQ=255) gACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTcc < 1:25482/76‑1 (MQ=255) aCTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTCGGCGGTGGCGAAGCGGttttttc > 2:434759/1‑73 (MQ=255) aCTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCa < 2:1803492/76‑1 (MQ=255) aCTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCa < 2:1513395/76‑1 (MQ=255) aCTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCa < 1:333968/76‑1 (MQ=255) tatGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGAAGAGGTTGGCGGTGTCGGAGGGGTTTTTCACGaa > 1:1388149/1‑76 (MQ=255) tGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAgg < 2:958865/76‑1 (MQ=255) tGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAgg < 2:958885/76‑1 (MQ=255) ggATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGCAGAGTTCGGCGGGGTCGGAGGGCTTTTTCACCAACgc > 1:1684374/1‑76 (MQ=255) aTAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTCGGCGGTGGCGGAGCGGTTTTCCACGAAggggg > 1:1826414/1‑73 (MQ=255) aTAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGgcgc < 1:253592/76‑1 (MQ=255) ggAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGc < 1:870006/76‑1 (MQ=255) gAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTCGGCGGTGTCGAAGCGATTTTTCACGAAGGCGCATGct > 1:670062/1‑76 (MQ=255) aaGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTCGGCGGTGTCGAAGCGATTTTTCACGAAGGCGCATGctc > 1:663885/1‑76 (MQ=255) aGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGctct < 1:145791/76‑1 (MQ=255) gACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCtt < 2:1048156/76‑1 (MQ=255) gACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCtt < 1:1267270/76‑1 (MQ=255) aCTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTc < 1:1767946/76‑1 (MQ=255) aCTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTc < 2:1879820/76‑1 (MQ=255) cTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTTCACGAAGGCGCACGCTCTTcc > 2:1743013/1‑76 (MQ=255) ttCCTGATCCAGATTATGGCTGGGGGCGAGGGTGGCGATGTGGAGACGAGTTTTTCCAAAAGGGCATGGTCTTccc > 1:743918/1‑75 (MQ=255) ttCCTGATCCAGATTATGGCTGGCGGAGAGGTCGGCGGAGGCCGAGCGAGTTTTCCCGAAAGCGCCAGCTCTTccc > 1:1254177/1‑75 (MQ=255) tGATCCAGATTATGGCTGGGGGAGAGGTCGGGGGTGTCGAAGCGGTTTTTCACCAAGGCGCAGGCTCTTCccccac > 1:1454193/1‑76 (MQ=255) tGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCcaccac < 2:653153/76‑1 (MQ=255) tGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCcaccac < 2:658144/76‑1 (MQ=255) gATCCAGATTATGGCTGGGGGAGAGGTCGGCGGTGTCGAAGCGGTTTTTCACGAAGGGGCATGCTCTTCCaccccc > 2:1910128/1‑76 (MQ=255) gATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCaccacc < 1:1449275/76‑1 (MQ=255) cAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGt < 1:1435174/76‑1 (MQ=255) cAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGt < 1:14290/76‑1 (MQ=255) aGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTg < 2:343965/76‑1 (MQ=255) gATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTgg < 2:1445650/76‑1 (MQ=255) aTTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTggg < 2:658423/76‑1 (MQ=255) ggcGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCAAGt < 1:947849/76‑1 (MQ=255) ggcGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCAAGt < 1:442773/76‑1 (MQ=255) gcGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATACTCTTCCACCACCGAGTGGGATGGCAAGta > 2:815560/1‑76 (MQ=255) | TGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCAAGTA > REL606/3733647‑3733793 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |