| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2042274 | 84 (1.430) | 15 (0.290) | 8/134 | 4.6 | 21.1% | coding (547/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | = 2042743 | 37 (0.710) | coding (78/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
AATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2042192‑2042274‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atacaattATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCTAACTTTATTTCT < REL606/2042743‑2042669 AATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAA > 1:149716/1‑76AATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAA > 1:149698/1‑76 ATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAAT < 1:356280/76‑1 ATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAAT < 1:1052231/76‑1 TGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATA < 1:1064199/76‑1 TGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATA < 1:734920/76‑1 AAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACA < 1:1144652/76‑1 AAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACA < 1:1144659/76‑1 AAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACA < 1:1144638/76‑1 AAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACA < 1:79580/76‑1 AATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACAATGGATTATAAATATTCAGTACAATACAAT < 1:982203/76‑1 ATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATT < 1:510471/76‑1 ATACCATGGATTATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGC > 2:1666334/1‑76 ATACCATGGATTATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGC > 2:1666315/1‑76 ATTATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGT > 2:718263/1‑76 ATTATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGT > 2:1138122/1‑76 ATTATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGT > 2:720385/1‑76 ATTATAAATATTAAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAACCTCTTTTGGT > 2:1138090/1‑76 TTATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTT > 2:1507667/1‑76 TATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTA > 2:1507644/1‑76 TATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTA > 2:1507660/1‑76 ATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTAT > 2:279021/1‑76 ATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTAT > 2:820945/1‑76 ATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTG > 2:591232/1‑76 ATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGT > 2:197148/1‑76 GTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCT > 2:1085002/1‑76 GTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCT > 2:1084998/1‑76 AATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCTAACTTTATT > 1:1633088/1‑76 ATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCTAACTTTATTT > 1:1489607/1‑76 TATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCTAACTTTATTTCT < 2:34945/76‑1 AATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2042192‑2042274‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atacaattATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCTAACTTTATTTCT < REL606/2042743‑2042669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |