| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041054 = | 66 (1.350) | 17 (0.380) | 10/136 | 3.0 | 17.5% | coding (330/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041468 = | 100 (2.260) | coding (1353/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2041133‑2041054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atataatGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAG > REL606/2041468‑2041538 CATTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATA > 1:443144/1‑76CATTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATA < 2:820534/76‑1 ATTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATAT > 1:1363799/1‑76 TTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATA > 1:868386/1‑76 TTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATA > 1:908796/1‑76 TGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAAT < 1:1273184/76‑1 TGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAAT < 1:1498579/76‑1 TGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAAT < 1:673958/76‑1 TTGTAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAAcat < 1:1039476/76‑4 TTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAA < 2:217854/76‑1 CATTCTTTTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAA < 2:877580/76‑1 CATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAA < 2:982328/76‑1 CATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAA < 2:982320/76‑1 CATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAA < 2:88153/76‑1 CATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAA < 2:877591/76‑1 ATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAA < 2:1190795/76‑1 ATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAA < 2:1190793/76‑1 ATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAATAT < 2:954944/76‑1 AATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAATATTATA < 2:1011584/76‑1 AATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAATATTATA < 2:1011600/76‑1 TGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAATATTATATT < 2:957086/76‑1 TGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAATATTATATT < 2:957069/76‑1 CTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAATATTATATTTAAT < 2:198693/76‑1 TTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATCTAATAAAATAGTAAATATTATATTTAATA < 2:485308/76‑1 TGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTC < 2:393569/76‑1 TGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATT < 2:1007243/76‑1 attTATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAG > 2:521857/4‑76 attTATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAG > 2:521852/4‑76 attTATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAG > 2:439486/4‑76 attTATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAG > 2:439485/4‑76 ATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTT > 1:249434/1‑76 ATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAG > 2:687806/1‑76 CATTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2041133‑2041054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atataatGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAG > REL606/2041468‑2041538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |