| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3737092 | 86 (1.760) | 10 (0.220) | 9/138 | 3.3 | 14.1% | coding (735/1254 nt) | waaL | Lipid A‑core, surface polymer ligase |
| ? | REL606 | = 3737547 | 43 (0.960) | coding (280/1254 nt) | waaL | Lipid A‑core, surface polymer ligase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAACTAAATCGTTATTTAAGTCATTCATTCTCATAAGCAATGTATCTTTAAAAGAAAATACACCTGCTAATAATGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3737016‑3737092‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgcaTATCGTGGCCCAATGGAAACTGGGAAAATTGCCTTGTGTAGTGCTTTTATTTTCTTGGTTCTTTTTGCTAAAAA < REL606/3737547‑3737474 TAACTAAATCGTTATTTAAGTCATTCATTCTCATAAGCAATGTATCTTTAAAAGAAAATACACCTGCTAATAATGC > 2:1526551/1‑76 CAATGTATCTTTAAAAGAAAATACACCTGCTAATAATGCATATCGTGGCCCAATGGAAACTGGGAAAATTGCCTTG > 2:614064/1‑76 TATCTTTAAAAGAAAATACACCTGCTAATAATGCATATCGTGGCCCAATGGAAACTGGGAAAATTGCCTTGTGTAG > 2:892088/1‑76 ATCTTTAAAAGAAAATACACCTGCTAATAATGCATATCGTGGCCCAATGGAAACTGGGAAAATTGCCTTGTGTAGT > 2:1471070/1‑76 TTTAAAAGAAAATACACCTGCTAATAATGCATATCGTGGCCCAATGGAAACTGGGAACATTGCCTTGTGTAGTGCT > 2:12816/1‑76 AAATACACCTGCTAATAATGCATATCGTGGCCCAATGGAAACTGGGAAAATTGCCTTGTGTAGTGCTTTTATTTTC > 2:533130/1‑76 AAATACACCTGCTAATAATGCATATCGTGGCCCAATGGAAACTGGGAAAATTGCCTTGTGTAGTGCTTTTATTTTC > 2:5941/1‑76 ACACCTGCTAATAATGCATATCGTGGCCCAATGGAAACTGGGAAAATTGCCTTGTGTAGTGCTTTTATTTTCTTGG > 2:1121036/1‑76 CCTGCTAATAATGCATATCGTGGCCCAATGGAAACTGGGAAAATTGCCTTGTGTAGTGCTTTTATTTTCTTGGTTC > 2:1001077/1‑76 CTGCTAATAATGCATATCGTGGCCCAATGGAAACTGGGAAAATTGCCTTGTGTAGTGCTTTTATTTTCTTGGTTCT > 2:385933/1‑76 CTAATAATGCATATCGTGGCCCAATGGAAACTGGGAAAATTGCCTTGTGTAGTGCTTTTTTTTTATTGGTTCTTTT > 2:457298/1‑76 GCATATCGTGGCCCAATGGAAACTGGGAAAATTGCCTTGTGTAGTGCTTTTATTTTCTTGGTTCTTTTTGCTAAAA > 2:902518/1‑76 CATATCGTGGCCCAATGGAAACTGGGAAAATTGCCTTGTGTAGTGCTTTTATTTTCTTGGTTCTTTTTGCTAAAAA < 1:620242/76‑1 CATATCGTGGCCCAATGGAAACTGGGAAAATTGCCTTGTGTAGTGCTTTTATTTTCTTGGTTCTTTTTGCTAAAAA > 2:984781/1‑76 TAACTAAATCGTTATTTAAGTCATTCATTCTCATAAGCAATGTATCTTTAAAAGAAAATACACCTGCTAATAATGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3737016‑3737092‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgcaTATCGTGGCCCAATGGAAACTGGGAAAATTGCCTTGTGTAGTGCTTTTATTTTCTTGGTTCTTTTTGCTAAAAA < REL606/3737547‑3737474 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |