| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,875,625 | 1 | . | T | 97.9% | 179.2 / ‑3.7 | 47 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (28/18); total (29/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACA‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875552‑3875695 | aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACA‑tt > 1:1717458/1‑76 (MQ=255) ttattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACA‑tttttt > 2:1290174/1‑76 (MQ=255) tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACA‑ttttttttca < 2:1689654/76‑4 (MQ=255) aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCg > 1:739124/1‑76 (MQ=255) aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCg > 1:739133/1‑76 (MQ=255) cATACGCGTCCTGCCTGTAATTTGCGAACGACTTTAAACCGCTTCACCTTGAACACCCTCCCT‑TTTTTTTCATCGt > 1:1212569/1‑76 (MQ=255) cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGt > 1:308505/1‑76 (MQ=255) cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGt > 1:1212566/1‑76 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTg < 2:1262437/76‑1 (MQ=255) cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGaaa > 2:1101525/1‑76 (MQ=255) cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGaaa < 1:182417/76‑1 (MQ=255) gcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAAt < 2:1327625/76‑1 (MQ=255) tCCTGATTGTAATTTGAGACCAAATTTAAACCGCTTCACCTTGAAAAACCT‑ACATTTTTTTTCATCGTGAAATGGa < 1:1142803/76‑1 (MQ=255) cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACa < 2:214390/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACag > 2:1262877/1‑76 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACag > 2:108404/1‑76 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACaga > 2:512582/1‑76 (MQ=255) aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACagag < 2:932841/76‑1 (MQ=255) tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGa < 2:17189/76‑1 (MQ=255) aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATaaa < 2:10561/76‑1 (MQ=255) tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTg < 2:1335799/76‑1 (MQ=255) agaACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGtt > 1:482595/1‑76 (MQ=255) aCGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 1:1383000/76‑1 (MQ=255) gAATTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 1:191047/76‑1 (MQ=255) aaTTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa > 2:857801/1‑76 (MQ=255) aaTTTAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:1050303/76‑1 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 1:395512/76‑1 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 1:1282999/76‑1 (MQ=255) ttAAACCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCACCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg < 2:533139/76‑1 (MQ=255) aaaCCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:907133/1‑76 (MQ=255) aaaCCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:907157/1‑76 (MQ=255) aaaCCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:907144/1‑76 (MQ=255) aaCCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 2:1583967/76‑1 (MQ=255) aaCCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt > 2:1753954/1‑76 (MQ=255) aCCGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 1:880011/76‑1 (MQ=255) ccGCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt > 1:1197127/1‑76 (MQ=255) gCTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc > 1:1900004/1‑76 (MQ=255) cTTCACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCATTAACGGATTATccc > 1:25445/1‑76 (MQ=255) cACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 2:1019032/1‑76 (MQ=255) cACCTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 2:633646/1‑76 (MQ=255) ccTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAACGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg < 1:1019842/76‑1 (MQ=255) cTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa > 1:422442/1‑76 (MQ=255) cTTGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa > 1:1899037/1‑76 (MQ=255) ttGAATAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc > 1:1067106/1‑76 (MQ=255) tGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:1560873/1‑76 (MQ=255) tGAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:847480/1‑76 (MQ=255) gAAAAAACT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa > 1:463634/1‑76 (MQ=255) aaaaaCT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa > 2:191803/1‑76 (MQ=255) aaaaCT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg > 2:155406/1‑76 (MQ=255) aaaCT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc > 2:930733/1‑76 (MQ=255) cT‑ACATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:259976/1‑76 (MQ=255) | AGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACT‑ACA‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875552‑3875695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |