| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041682 = | 56 (0.940) | 13 (0.260) | 10/128 | 4.0 | 16.4% | coding (1139/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | 2041834 = | 85 (1.680) | coding (987/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 101 total aligned reads displayed.
AAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGATT > REL606/2041759‑2041909 | aaaaaGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATa > 1:1577137/1‑76 (MQ=255)aaaaaGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATa > 1:1577117/1‑76 (MQ=255) aaaGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACa < 1:1694598/76‑1 (MQ=255) aaGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACaa > 2:359240/1‑76 (MQ=255) aaGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACaa > 2:1192442/1‑76 (MQ=255) aaGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACaa < 1:84440/76‑1 (MQ=255) aaGATAACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACaa < 1:202475/76‑1 (MQ=255) aaGATAACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACaa < 1:820311/76‑1 (MQ=255) aGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACaaa < 1:663715/76‑1 (MQ=255) gATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAg < 1:9841/76‑1 (MQ=255) ctCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGt > 2:820773/2‑76 (MQ=255) aTCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGt < 1:1013802/76‑1 (MQ=255) aTCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGt < 1:1339378/76‑1 (MQ=255) tCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTa < 1:1468972/76‑1 (MQ=255) cACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAg < 1:1001315/76‑1 (MQ=255) cTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGaa < 1:807979/76‑1 (MQ=255) cTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGaa > 1:48172/1‑76 (MQ=255) cTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGaa < 1:213385/76‑1 (MQ=255) cTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGaa < 1:1186298/76‑1 (MQ=255) cTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGaa < 2:269457/76‑1 (MQ=255) ttCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGaaa < 1:479849/76‑1 (MQ=255) tCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAAc < 1:1543094/76‑1 (MQ=255) tCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAAc > 2:417373/1‑76 (MQ=255) gCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAg > 1:695963/1‑76 (MQ=255) cccATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGa > 1:1011326/1‑76 (MQ=255) cccATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGa > 1:1497567/1‑76 (MQ=255) cATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAat < 1:553618/76‑1 (MQ=255) aTGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAata > 1:1880720/1‑76 (MQ=255) aTGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAata > 1:90713/1‑76 (MQ=255) tGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAatat < 1:480389/76‑1 (MQ=255) tGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAatat < 2:1693419/76‑1 (MQ=255) gAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATc > 1:1287522/1‑76 (MQ=255) aaCCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCa > 1:1081644/1‑76 (MQ=255) ccTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGa > 1:1887967/1‑76 (MQ=255) ccTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGa > 1:758342/1‑76 (MQ=255) cTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGAt > 1:728508/1‑76 (MQ=255) cTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGAt > 1:1771217/1‑76 (MQ=255) cTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGAt > 1:1880589/1‑76 (MQ=255) cTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGAt > 1:1235801/1‑76 (MQ=255) cTGTAGGATATTAATATTTATTACATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGAt < 1:215064/76‑1 (MQ=255) tGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATg > 2:1236173/1‑76 (MQ=255) gTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGt > 1:52505/1‑76 (MQ=255) tAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTa > 2:1407011/1‑76 (MQ=255) ggATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTaaa > 1:795053/1‑76 (MQ=255) gATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAAt < 1:120297/76‑1 (MQ=255) atatTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAAtt > 1:103826/1‑76 (MQ=255) atatTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAAta < 2:1105881/76‑2 (MQ=255) atTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAAtaaa < 2:110696/76‑4 (MQ=255) atTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTc > 1:991058/1‑76 (MQ=255) aaTATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcac < 1:1832932/76‑1 (MQ=255) atatTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcact > 2:1711762/1‑76 (MQ=255) atttattGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcactca < 2:834726/76‑1 (MQ=255) atttattGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcactca < 2:834733/76‑1 (MQ=255) tttattGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcactcat < 2:876872/76‑2 (MQ=255) tttattGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcactcac < 1:640877/76‑1 (MQ=255) ttattGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAACTTTCcactcact > 1:32455/1‑76 (MQ=255) ttattGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcactcact > 1:53524/1‑76 (MQ=255) ttattGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcactcact > 1:32465/1‑76 (MQ=255) ttGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTcc > 2:1770044/1‑76 (MQ=255) aTGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCtaat > 1:1619829/1‑76 (MQ=255) aTGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCtaat > 1:781111/1‑76 (MQ=255) tGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCtaata < 2:1101279/76‑1 (MQ=255) tataGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTaataat > 1:1642274/1‑76 (MQ=255) tataGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTaataat < 2:570681/76‑1 (MQ=255) tataGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTaataat > 1:761227/1‑76 (MQ=255) tataGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTaataat > 1:761241/1‑76 (MQ=255) aGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACa < 1:1319092/76‑1 (MQ=255) aGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACa > 1:831567/1‑76 (MQ=255) ggATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACag > 1:289757/1‑76 (MQ=255) ggATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACag < 1:595181/76‑1 (MQ=255) gATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACaga < 2:676141/76‑1 (MQ=255) gATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACaga < 1:658885/76‑1 (MQ=255) aTAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACagag > 1:820745/1‑76 (MQ=255) aTAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACagag > 1:1894413/1‑76 (MQ=255) aTAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACagag > 1:1055968/1‑76 (MQ=255) tAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAgaga < 1:335866/76‑1 (MQ=255) aaaTCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGAc > 2:160472/1‑76 (MQ=255) aaTCATAAATGCAATACAAAGTAGAAACAGAATATCAGCTGTAAATTTCCACTAACGTCCTAATAATATAGAGACt > 1:363044/1‑76 (MQ=255) aaTCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACt > 1:1441/1‑76 (MQ=255) aaTCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACt > 1:363065/1‑76 (MQ=255) aTCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTa > 1:886093/1‑76 (MQ=255) cATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAAt > 1:316490/1‑76 (MQ=255) cATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAAt > 1:1608267/1‑76 (MQ=255) cATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAAt > 1:10711/1‑76 (MQ=255) aTAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATg < 1:671228/76‑1 (MQ=255) aTAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATg < 1:1572917/76‑1 (MQ=255) aTAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATg < 1:671248/76‑1 (MQ=255) aTAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATg > 1:1768398/1‑76 (MQ=255) aTAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATg < 1:409425/76‑1 (MQ=255) tAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATgg > 2:861664/1‑76 (MQ=255) aaTGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCt < 2:1556936/76‑1 (MQ=255) aTGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCtt > 1:1321969/1‑76 (MQ=255) aTGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCtt > 1:1502728/1‑76 (MQ=255) tGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTc > 1:276816/1‑76 (MQ=255) tGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTc < 1:1250543/76‑1 (MQ=255) cAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCga > 1:1644682/1‑76 (MQ=255) cAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCga > 2:1489520/1‑76 (MQ=255) cAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCga > 2:1350212/1‑76 (MQ=255) tACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGAt > 1:165112/1‑76 (MQ=255) aCAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGAtt > 2:1781675/1‑76 (MQ=255) | AAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGATT > REL606/2041759‑2041909 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |