| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3022554 = | 84 (1.400) | 6 (0.110) | 5/138 | 6.7 | 6.1% | coding (131/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022717 = | 106 (1.920) | intergenic (‑33/+541) | ECB_02821/ECB_02822 | hypothetical protein/bifunctional Ribulose 5‑phosphate reductase/CDP‑ribitol pyrophosphorylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCATTTGAGCAACTTATTCGTTACTTTCAATCACAAGTATTTAATAACAAGGATTGTATTAGTGTTTTTTGTAAATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3022634‑3022554‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atattaACATCTATTTATTTATGATATCTCACAGGGTTTAATATTTTATAAATGTTATTAACAAGACCAGCAGGTTTATCT > REL606/3022717‑3022791 TGCATTTGAGCAACTTATTCGTTACTTTCAATCACAAGTATTTAATAACAAGGATTGTATTAGTGTTTTTTGTAAA < 1:614001/76‑1 GCATTTGAGCAACTTATTCGTTACTTTCAATCACAAGTATTTAATAACAAGGATTGTATTAGTGTTTTTTGTAAAT < 2:395780/76‑1 TTGAGCAACTTATTCGTTACTTTCAATCACAAGTATTTAATAACAAGGATTGTATTAGTGTTTTTTGTAAATATTA < 1:458823/76‑1 TCGTTACTTTCAATCACAAGTATTTAATAACAAGGATTGTATTAGTGTTTTTTGTAAATATTAACATCTATTTATT < 2:721764/76‑1 TCGTTACTTTCAATCACAAGTATTTAATAACAAGGATTGTATTAGTGTTTTTTGTAAATATTAACATCTATTTATT < 2:1636667/76‑1 CGTTACTTTCAATCACAAGTATTTAATAACAAGGATTGTATTAGTGTTTTTTGTAAATATTAACATCTATTTATTT < 2:139191/76‑1 TTACTTTCAATCACAAGTATTTAATAACAAGGATTGTATTAGTGTTTTTTGTAAATATTAACATCTATTTATTTAT < 2:384449/76‑1 CTTTCAATCACAAGTATTTAATAACAAGGATTGTATTAGTGTTTTTTGTAAATATTAACATCTATTTATTTATGAT < 2:233524/76‑1 AAGGATTGTATTAGTGTTTTTTGTAAATATTAACATCTATTTATTTATGATATCTCACAGGGTTTAATATTTTATA < 2:34637/76‑1 ATATTAACATCTATTTATTTATGATATCTCACAGGGTTTAATATTTTATAAATGTTATTAACAAGACCAGCAGGTT > 2:954973/1‑76 ATATTAACATCTATTTATTTATGATATCTCACAGGGTTTAATATTTTATAAATGTTATTAACAAGACCAGCAGGTT < 1:1451526/76‑1 TATTAACATCTATTTATTTATGATATCTCACAGGGTTTAATATTTTATAAATGTTATTAACAAGACCAGCAGGTTT > 2:1293327/1‑76 TATTAACATCTATTTATTTATGATATCTCACAGGGTTTAATATTTTATAAATGTTATTAACAAGACCAGCAGGTTT < 1:289717/76‑1 ATTAACATCTATTTATTTATGATATCTCACAGGGTTTAATATTTTATAAATGTTATTAACAAGACCAGCAGGTTTA > 1:1074367/1‑76 TTAACATCTATTTATTTATGATATCTCACAGGGTTTAATATTTTATAAATGTTATTAACAAGACCAGCAGGTTTAT < 1:53513/76‑1 TTAACATCTATTTATTTATGATATCTCACAGGGTTTAATATTTTATAAATGTTATTAACAAGACCAGCAGGTTTAT > 1:1506564/1‑76 TTAACATCTATTTATTTATGATATCTCACAGGGTTTAATATTTTATAAATGTTATTAACAAGACCAGCAGGTTTAT > 2:925193/1‑76 TAACATCTATTTATTTATGATATCTCACAGGGTTTAATATTTTATAAATGTTATTAACAAGACCAGCAGGTTTATC > 2:1764698/1‑76 TAACATCTATTTATTTATGATATCTCACAGGGTTTAATATTTTATAAATGTTATTAACAAGACCAGCAGGTTTATC > 1:138955/1‑76 AACATCTATTTATTTATGATATCTCACAGGGTTTAATATTTTATAAATGTTATTAACAAGACCAGCAGGTTTATCT > 1:601301/1‑76 TGCATTTGAGCAACTTATTCGTTACTTTCAATCACAAGTATTTAATAACAAGGATTGTATTAGTGTTTTTTGTAAATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3022634‑3022554‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atattaACATCTATTTATTTATGATATCTCACAGGGTTTAATATTTTATAAATGTTATTAACAAGACCAGCAGGTTTATCT > REL606/3022717‑3022791 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |