| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,875,625 | 1 | . | T | 97.8% | 174.0 / ‑2.5 | 45 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (24/20); total (25/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.21e-01 | |||||||||||
ATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGC > REL606/3875555‑3875692 | attattCAATATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt > 2:261943/1‑76 (MQ=255)attattCAACATACGCGTCCTGACTGTAATTTGAGAACGGATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt < 1:1744868/76‑1 (MQ=255) tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt‑tt < 2:767504/76‑1 (MQ=255) tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt‑tt > 1:47089/1‑76 (MQ=255) tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt‑tt > 1:941239/1‑76 (MQ=255) ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt‑tttc < 1:1172043/76‑3 (MQ=255) ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt‑tttc > 2:1773567/1‑74 (MQ=255) tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttt‑tttca < 1:1426359/76‑4 (MQ=255) aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCg < 1:250079/76‑1 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTg > 1:481279/1‑76 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGaa < 2:1755749/76‑1 (MQ=255) gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATgg < 2:1863740/76‑1 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGAc > 1:1739482/1‑76 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAACAACTACATTTTTT‑TTCATCGTGAAATGTACagg > 1:1225218/1‑75 (MQ=255) aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACagag > 2:182820/1‑76 (MQ=255) cTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAgg > 1:320813/1‑76 (MQ=255) tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGa > 1:1705612/1‑76 (MQ=255) tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGa > 2:826213/1‑76 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATaa < 1:458654/76‑1 (MQ=255) tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAAt > 1:945812/1‑76 (MQ=255) tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAAt > 1:1615555/1‑76 (MQ=255) ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAAtt > 1:1110595/1‑76 (MQ=255) agaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGtt > 2:523604/1‑76 (MQ=255) aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCa < 1:1174408/76‑1 (MQ=255) aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCa < 1:1424146/76‑1 (MQ=255) aCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 2:1987842/76‑1 (MQ=255) aCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 1:519519/76‑1 (MQ=255) gAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 2:1755951/76‑1 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGCAATGGACAGAGGATAAATTGTTCAATAACg > 1:268569/1‑76 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg > 2:1331706/1‑76 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg > 1:268580/1‑76 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 2:418893/76‑1 (MQ=255) tAAACCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa < 2:1533050/76‑1 (MQ=255) aaCCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 1:440554/76‑1 (MQ=255) aaCCGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 2:1705612/76‑1 (MQ=255) cGCTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATc < 1:114720/76‑1 (MQ=255) cTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc > 1:830314/1‑76 (MQ=255) cTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc > 1:660318/1‑76 (MQ=255) cTTCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc > 1:1551073/1‑76 (MQ=255) ttCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc < 2:114848/76‑1 (MQ=255) tCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 1:1514183/1‑76 (MQ=255) tCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 2:1490001/1‑76 (MQ=255) tCACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg < 1:14787/76‑1 (MQ=255) cACCTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAGTTGTTCAATAACGGATTATCCCCGc > 2:395971/1‑76 (MQ=255) cTTGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 1:436459/76‑1 (MQ=255) cTTGAAAAAACTACA‑TTTTTCTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa > 1:530245/1‑76 (MQ=255) ttGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc > 1:41934/1‑76 (MQ=255) tGAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 2:1340643/1‑76 (MQ=255) gAAAAAACTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa > 2:985857/1‑76 (MQ=255) aaaaaaCTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa < 2:1991355/76‑1 (MQ=255) aaaaaaCTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa < 1:1060548/76‑1 (MQ=255) aaaaCTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg > 2:1994499/1‑76 (MQ=255) aaaCTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc < 1:603640/76‑1 (MQ=255) aaaCTACATTTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc > 1:1223944/1‑76 (MQ=255) | ATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTTT‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGC > REL606/3875555‑3875692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |