| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2040618 = | 42 (0.680) | 8 (0.140) | 6/134 | 5.8 | 18.7% | coding (766/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040858 = | 32 (0.580) | coding (526/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGCTATTTGCATTTATATTTCCTGGAAATATAGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACAAGTCCAAAGGCAGCATTAATTTC > REL606/2040545‑2040693 | ttGCTATTTGCATTTATATTTCCTGGTAATATAGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTAt > 1:1038877/1‑76 (MQ=255) gCTATTTGCATTTATATTTCCTGGAAATATAGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCa < 1:436478/76‑1 (MQ=255) tATTTGCATTTATATTTCCTGGAAATATAGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAat > 1:263104/1‑76 (MQ=255) aTTTGCATTTATATTTCCTGGAAATATAGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAatt < 2:362734/76‑1 (MQ=255) aTTTGCATTTATATTTCCTGGAAATATAGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAatt > 2:436520/1‑76 (MQ=255) aTTTGCATTTATATTTCCTGGAAATATAGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAatt < 2:6451/76‑1 (MQ=255) tttGCATTTATATTTCCTGGAAATATAGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAatta > 2:1095829/1‑76 (MQ=255) gCATTTATATTTCCTGGAAATATAGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTAttt < 2:597008/76‑1 (MQ=255) tttCCTGGAAATATAGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAg < 1:1372325/76‑1 (MQ=255) ccTGGAAATATAGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGata > 2:1727170/1‑76 (MQ=255) ccTGGAAATATAGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGata > 1:974858/1‑76 (MQ=255) cTGGAAATATAGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGatat > 2:140001/1‑76 (MQ=255) cTGGAAATATAGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGatat < 1:56/76‑1 (MQ=255) aaaTATAGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAg > 2:65037/1‑76 (MQ=255) aaTATAGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGc > 2:122977/1‑76 (MQ=255) ataGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCt > 1:1283542/1‑76 (MQ=255) tAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAat < 1:1244206/76‑1 (MQ=255) tACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATg < 1:1326107/76‑1 (MQ=255) tACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATg < 1:198350/76‑1 (MQ=255) tACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATAGTGAGCCCTCAATATg < 1:198371/76‑1 (MQ=255) ggAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTa < 1:1992923/76‑1 (MQ=255) ggAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTa < 1:1992902/76‑1 (MQ=255) gAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTaa < 1:918294/76‑1 (MQ=255) tCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTg < 1:402229/76‑1 (MQ=255) cccTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGa > 2:652383/1‑76 (MQ=255) cccTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGa > 2:1683667/1‑76 (MQ=255) ccTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGaa > 1:1654457/1‑76 (MQ=255) cTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAAc > 1:882218/1‑76 (MQ=255) tttCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACa < 1:784753/76‑1 (MQ=255) tttCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACa < 1:921832/76‑1 (MQ=255) tttCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACa < 1:921836/76‑1 (MQ=255) ttCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACaa > 2:843669/1‑76 (MQ=255) gTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACAAGTcc > 1:602533/1‑76 (MQ=255) tAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACAAGTCCa > 1:1215621/1‑76 (MQ=255) tAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACAAGTCCa < 2:1947493/76‑1 (MQ=255) aaTTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACAAGTCCaaa < 1:191247/76‑1 (MQ=255) cGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACAAGTCCAAAGgcag > 1:834193/1‑76 (MQ=255) cGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACAAGTCCAAAGgcag > 1:1603067/1‑76 (MQ=255) cGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACAAGTCCAAAGgcag > 1:129223/1‑76 (MQ=255) tAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACAAGTCCAAAGGCAGCAt > 2:1417135/1‑76 (MQ=255) tAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACAAGTCCAAAGGCAGCAt > 2:1417120/1‑76 (MQ=255) atttATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACAAGTCCAAAGGCAGCATTAAt > 2:906682/4‑76 (MQ=255) cTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACAAGTCCAAAGGCAGCATTAAttt < 1:1745324/76‑1 (MQ=255) tATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACAAGTCCAAAGGCAGCATTAATTTc < 1:634516/76‑1 (MQ=255) tATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACAAGTCCAAAGGCAGCATTAATTTc < 1:140001/76‑1 (MQ=255) | TTGCTATTTGCATTTATATTTCCTGGAAATATAGTAATACCCGGAGTCCCTTTCAGTAAATTCCGGTAAAGACTATCAATTATTTTTCGCTTAGATATTGAGCCCTCAATATGCTTTAACTGAACAAGTCCAAAGGCAGCATTAATTTC > REL606/2040545‑2040693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |