| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,875,625 | 1 | . | T | 95.9% | 187.3 / 0.6 | 49 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base T (22/25); total (23/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695 | aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa < 1:176388/76‑1 (MQ=255) aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tt > 1:1726177/1‑76 (MQ=255) gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttt < 1:202734/76‑1 (MQ=255) cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tttt < 2:1100630/76‑1 (MQ=255) tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttttt > 2:1068992/1‑76 (MQ=255) ntCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttttttttc > 1:232718/2‑74 (MQ=255) aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCg < 2:693554/76‑1 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTg < 2:1621056/76‑1 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTg < 2:611784/76‑1 (MQ=255) tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGa < 2:1719008/76‑1 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGaa > 2:15855/1‑76 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGaa < 1:707986/76‑1 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGaa > 1:1392946/1‑76 (MQ=255) gcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAAt > 1:80969/1‑76 (MQ=255) cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATg > 1:902564/1‑76 (MQ=255) gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATgg < 1:595680/76‑1 (MQ=255) gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATgg < 2:942219/76‑1 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGAc < 2:277541/76‑1 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGAc < 1:1674343/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACag < 1:163474/76‑1 (MQ=255) cTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAgg > 2:86785/1‑76 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGAt > 2:190455/1‑76 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATaa < 1:1729981/76‑1 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATaa < 1:759671/76‑1 (MQ=255) aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATaaa < 2:843432/76‑1 (MQ=255) agaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGtt < 2:1726177/76‑1 (MQ=255) gaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTc < 1:1653827/76‑1 (MQ=255) aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCa < 1:1555511/76‑1 (MQ=255) aCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCaa < 1:50503/76‑1 (MQ=255) cGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAAt > 1:201133/1‑76 (MQ=255) gAATTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 2:237877/76‑1 (MQ=255) aaTTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CCTCGTGAAATGGACAGAAGATAAAATTTTtaataa > 1:1509421/1‑76 (MQ=255) aaTTTAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 1:540835/76‑1 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg > 1:1680704/1‑76 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 2:80969/76‑1 (MQ=255) ttAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg > 1:437152/1‑76 (MQ=255) tAAACCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 1:202087/1‑76 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt < 1:962432/76‑1 (MQ=255) aCCGCTTCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa > 1:224189/1‑76 (MQ=255) tCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 2:819659/1‑76 (MQ=255) tCACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg < 2:648501/76‑1 (MQ=255) cACCTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 1:222402/1‑76 (MQ=255) cTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 2:1592617/76‑1 (MQ=255) cTTGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa > 1:412477/1‑76 (MQ=255) ttGAAAAAACTACA‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:989333/1‑76 (MQ=255) tGAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 2:677301/1‑76 (MQ=255) gAAAAAACTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa > 1:503424/1‑76 (MQ=255) aaaaaaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa > 2:581824/1‑76 (MQ=255) aaaaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg < 1:1338971/76‑1 (MQ=255) aaaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCAGCTGACGAAAgc > 2:1527821/1‑76 (MQ=255) aaaCTACA‑TTTTTTTGCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc < 2:194849/76‑1 (MQ=255) aaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg < 2:1307828/76‑1 (MQ=255) aaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg > 1:256874/1‑76 (MQ=255) aaCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg > 1:256858/1‑76 (MQ=255) aCTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcgc > 1:730441/1‑76 (MQ=255) cTACATTTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:1557090/1‑76 (MQ=255) | ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875550‑3875695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |