New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2039335 = | 28 (0.510) | 7 (0.140) | 6/138 | 5.5 | 19.0% | coding (360/747 nt) | wbbA | putative glycosyltransferase WbbA |
? | REL606 | 2039563 = | 34 (0.680) | coding (132/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
GAAGATCGTCGAGTTGGAAAAATTGATAAAAATGATTTAATATATTTTTTAGAAAATGATTATTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2039400‑2039335 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatttgGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTAAACCACTCAGG > REL606/2039563‑2039634 GAAGATCGTCGAGTTGGAAAAATTGATAAAAATGATTTAATATATTTTTTAGAAAATGATTATTTGGTCTTTATAT < 2:576575/76‑1 AAGATCGTCGAGTTGGAAAAATTGATAAAAATGATTTAATATATTTTTTAGAAAATGATTATTTGGTCTTTATATT < 2:1189280/76‑1 TCGTCGAGTTGGAAAAATTGATAAAAATGATTTAATATATTTTTTAGAAAATGATTATTTGGTCTTTATATTTAGA < 2:1730677/76‑1 AAAAATTGATAAAAATGATTTAATATATTTTTTAGAAAATGATTATTTGGTCTTTATATTTAGATTCTTTTATTGT < 2:1355971/76‑1 AAAATGATTTAATATATTTTTTAGAAAATGATTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGAT < 2:619238/76‑1 AAAATGACTTAATATATTTTTTAGAAAATGATTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGAT < 2:619240/76‑1 ATGATTTAATATATTTTTTAGAAAATGATTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTA < 2:1624640/76‑1 TATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTAAACCACTCA < 2:1558398/76‑1 TTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTAAACCACTCAGG > 1:1691464/1‑76 GAAGATCGTCGAGTTGGAAAAATTGATAAAAATGATTTAATATATTTTTTAGAAAATGATTATTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2039400‑2039335 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatttgGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTAAACCACTCAGG > REL606/2039563‑2039634 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |