| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3893550 | 5 (0.090) | 43 (0.820) +GGG |
36/142 | 0.4 | 89.8% | intergenic (+5/‑51) | kup/insJ‑5 | potassium transporter/IS150 hypothetical protein |
| ? | REL606 | 3893551 = | NA (NA) | intergenic (+6/‑50) | kup/insJ‑5 | potassium transporter/IS150 hypothetical protein | |||||
GCGTGCACCAGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3893476‑3893550‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTG > REL606/3893551‑3893625 ||| GCGTGCACCAGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAG < 2:615455/76‑1 TGCACCAGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGG < 1:1283021/76‑1 CCAGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTG < 1:1396159/76‑1 CCAGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTG > 1:22622/1‑76 CAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGC > 2:1145785/1‑76 CAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGC < 1:542237/76‑1 TGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCA < 1:394494/76‑1 GAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCAT > 1:737191/1‑76 AAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATT < 1:143177/76‑1 AATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTT > 2:554213/1‑76 TCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTG < 1:510525/76‑1 CCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGT < 2:630591/76‑1 GCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGG > 2:898593/1‑76 GCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGG > 1:906033/1‑76 CCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGA > 2:1139740/1‑76 CAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATG > 2:953192/1‑76 GGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAA < 1:427972/76‑1 ATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGA < 2:1445295/76‑1 CGAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT > 1:206375/1‑76 GAACTGGGTACTCGGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 2:311824/76‑1 GAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA > 2:486947/1‑76 GAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 1:20277/76‑1 GAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 1:458761/76‑1 GAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA > 1:961051/1‑76 GAACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 2:11632/76‑1 ACTGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC > 2:1279742/1‑76 TGGGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCC > 2:1641852/1‑76 GGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT < 1:236322/76‑1 GGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT > 1:810589/1‑76 GGTACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT < 1:434088/76‑1 TACTCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA > 2:1293123/1‑76 TCAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT < 2:1053127/76‑1 CAGGTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG < 1:1444232/76‑1 GTCGAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCA < 2:1593352/76‑1 GAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAG > 2:880478/1‑76 GAAATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAG > 2:818984/1‑76 AATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCC < 2:1585728/76‑1 AATCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCC < 1:898593/76‑1 TCTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAA < 1:935587/76‑1 CTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAA < 1:1166757/76‑1 CTAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAA < 1:367191/76‑1 TAACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAA > 2:213450/1‑76 ACGCCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATA < 1:301944/76‑1 CCAGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCC > 2:460512/1‑76 AGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTT > 1:1650069/1‑76 AGGGGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTT < 2:653795/76‑1 GGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTG > 2:1479157/1‑76 ||| GCGTGCACCAGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3893476‑3893550‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTG > REL606/3893551‑3893625 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |