New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 2036917	56 (1.030)	9 (0.180)	7/140	5.1	18.3%	coding (42/1113 nt)	wbbC	putative glycosyltransferase WbbC
	?	REL606	= 2037192	28 (0.550)					coding (939/1176 nt)	wzy	O antigen polymerase (Wzy)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAGTCCTAAGTG  >  REL606/2036844‑2036986                                                                          |                                                                      caatcCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTaa                                                                     <  2:463264/76‑1 (MQ=255)  aatcCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAAt                                                                    >  2:1749033/1‑76 (MQ=255)   atcCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAAtt                                                                   <  2:619159/76‑1 (MQ=255)     cccATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCt                                                                 <  1:1298063/76‑1 (MQ=255)      ccATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTg                                                                <  2:1733329/76‑1 (MQ=255)       cATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGa                                                               >  1:352043/1‑76 (MQ=255)        aTCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGaa                                                              >  1:1115027/1‑76 (MQ=255)         tCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGaaa                                                             <  1:381596/76‑1 (MQ=255)          cGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGaaaa                                                            >  1:312796/1‑76 (MQ=255)          cGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGaaaa                                                            <  1:766877/76‑1 (MQ=255)                 ttCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGt                                                     >  1:138928/1‑76 (MQ=255)                    aTTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTaaa                                                  <  1:1445979/76‑1 (MQ=255)                    aTTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTaaa                                                  <  1:375713/76‑1 (MQ=255)                    aTTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTaaa                                                  <  1:1306491/76‑1 (MQ=255)                     ttAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAAt                                                 <  1:563632/76‑1 (MQ=255)                       aaTATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTg                                               <  1:999698/76‑1 (MQ=255)                       aaTATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTg                                               <  1:926075/76‑1 (MQ=255)                         tatTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGaa                                             <  1:236766/76‑1 (MQ=255)                         tatTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGaa                                             <  1:236773/76‑1 (MQ=255)                         tatTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGaa                                             <  1:236793/76‑1 (MQ=255)                          atTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGaaa                                            <  2:1499419/76‑1 (MQ=255)                           ttttttGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGaaaa                                           >  1:1660291/1‑76 (MQ=255)                             ttttGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACt                                         >  1:461059/1‑76 (MQ=255)                             ttttGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACt                                         >  1:32719/1‑76 (MQ=255)                              tttGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTa                                        >  1:117273/1‑76 (MQ=255)                              tttGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTa                                        <  2:138928/76‑1 (MQ=255)                                     ttAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGt                                 <  1:1742409/76‑1 (MQ=255)                                       aaaTCTCTAAAGTATACTCCAACCCCATAATATTTTTATTTTGAAAAAGAAAGTAAATTGAAAACTATTTTCGTCa                               >  1:868758/1‑76 (MQ=255)                                       aaaTCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCa                               <  1:839313/76‑1 (MQ=255)                                       aaaTCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCa                               >  1:761453/1‑76 (MQ=255)                                        aaTCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCAt                              >  1:606492/1‑76 (MQ=255)                                         aTCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATa                             >  1:498381/1‑76 (MQ=255)                                         aTCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATa                             >  1:506719/1‑76 (MQ=255)                                         aTCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATa                             >  1:710025/1‑76 (MQ=255)                                            tctAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAg                          <  1:227005/76‑1 (MQ=255)                                            tctAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAg                          >  2:201327/1‑76 (MQ=255)                                            tctAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAg                          >  1:627451/1‑76 (MQ=255)                                               aaaGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGtt                       <  2:1476126/76‑1 (MQ=255)                                                aaGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGttt                      >  1:1611176/1‑76 (MQ=255)                                                 tggataCTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGtttt                     >  2:1555958/4‑76 (MQ=255)                                                        tCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCttt              >  1:575761/1‑76 (MQ=255)                                                         ccAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCtttt             >  1:1414689/1‑76 (MQ=255)                                                          cAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTa            >  2:636509/1‑76 (MQ=255)                                                            aCCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAGt          >  1:729180/1‑76 (MQ=255)                                                              cccATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAGTcc        <  1:1103219/76‑1 (MQ=255)                                                               ccATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAGTCCt       >  1:575837/1‑76 (MQ=255)                                                               ccATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAGTCCt       <  1:1170599/76‑1 (MQ=255)                                                               ccATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAGTCCt       <  2:424503/76‑1 (MQ=255)                                                               ccATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAGTCCt       <  2:424526/76‑1 (MQ=255)                                                               ccATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAGTCCt       <  2:582662/76‑1 (MQ=255)                                                                cATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAGTCCTa      >  1:481357/1‑76 (MQ=255)                                                                cATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAGTCCTa      >  1:1495406/1‑76 (MQ=255)                                                                    atatTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAGTCCTAAgtg  <  1:1129959/76‑1 (MQ=255)                                                                    atatTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAGTCCTAAgtg  <  1:1129956/76‑1 (MQ=255)                                                                    atatTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAGTCCTAAgtg  <  1:1129944/76‑1 (MQ=255)                                                                    atatTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAGTCCTAAgtg  >  1:1077241/1‑76 (MQ=255)                                                                          |                                                                      CAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAGTCCTAAGTG  >  REL606/2036844‑2036986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.