| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2037295 | 40 (0.730) | 8 (0.160) | 7/134 | 4.9 | 19.1% | coding (836/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | = 2037489 | 32 (0.660) | coding (642/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATTCCATGAGCTATCCAGAGATGGAGAAATATATCTGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAA > REL606/2037221‑2037368 | caTTCCATGAGCTATCCAGAGATGGAGAAATATATCTGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACt > 1:750030/1‑76 (MQ=255) cATGAGCTATCCAGAGATGGAGAAATATATCTGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACTCCCTa < 2:281844/76‑1 (MQ=255) gAGCTATCCAGAGATGGAGAAATATATCTGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACTCCCTAAtt > 1:871611/1‑76 (MQ=255) gAGCTATCCAGAGATGGAGAAATATATCTGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACTCCCTAAtt < 1:1502948/76‑1 (MQ=255) gCTATCCAGAGATGGAGAAATATATCTGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACTCCCTAAtttt < 1:616078/76‑1 (MQ=255) cTATCCAGAGATGGAGAAATATATCTGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACTCCCTAAttttt > 1:1107149/1‑76 (MQ=255) cTATCCAGAGATGGAGAAATATATCTGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACTCCCTAAttttt > 1:1318489/1‑76 (MQ=255) cTATCCAGAGATGGAGAAATATATCTGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACTCCCTAAttttt > 1:1318498/1‑76 (MQ=255) aTCCAGAGATGGAGAAATATATCTGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTa > 1:353883/1‑76 (MQ=255) ccAGAGATGGAGAAATATATCTGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAgn < 1:1029074/76‑2 (MQ=255) ccAGAGATGGAGAAATATATCTGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGc < 2:705486/76‑1 (MQ=255) gagaTGGAGAAATATATCTGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAAt > 1:498787/1‑76 (MQ=255) gaTGGAGAAATATATCTGGCAAGCAAATCTGGATTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATta < 2:269231/76‑1 (MQ=255) ggAGAAATATATCTGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATtatat < 1:1474766/76‑1 (MQ=255) aaaTATATCTGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATataaat > 2:357279/1‑76 (MQ=255) tCTGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAAttt > 1:226320/1‑76 (MQ=255) tGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTttc > 1:249263/1‑76 (MQ=255) caagcaaATCTGGAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTttcttc > 1:610283/1‑76 (MQ=255) caaATCTGGAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCaaaa > 1:526644/1‑76 (MQ=255) aaaTCTGGAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCaaaaa < 1:172564/76‑1 (MQ=255) aaTCTGGAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCaaaaaa > 2:246913/1‑76 (MQ=255) aaTCTGGAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCaaaaaa > 1:244130/1‑76 (MQ=255) cTGGAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATc > 1:322138/1‑76 (MQ=255) ggAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAg > 1:733047/1‑76 (MQ=255) taatATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGt > 2:207580/4‑76 (MQ=255) taatATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGt > 2:221818/4‑76 (MQ=255) gAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGt < 1:515130/76‑1 (MQ=255) aGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTa > 1:1170189/1‑76 (MQ=255) aGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTa < 1:39144/76‑1 (MQ=255) aGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTa < 1:199489/76‑1 (MQ=255) tATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGa > 2:774966/1‑76 (MQ=255) ttCTTTTCTTCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATtctc > 2:657000/2‑76 (MQ=255) ntCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATtctc > 1:1542929/2‑76 (MQ=255) aTCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATtctc > 1:1648692/1‑76 (MQ=255) tCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTcc > 1:1487531/1‑76 (MQ=255) cTTTTCTTCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCa > 2:503343/1‑76 (MQ=255) atcatcAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCatta > 2:952753/1‑76 (MQ=255) tcatcaGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCattat < 2:316512/76‑1 (MQ=255) catcaGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCattatt > 1:26572/1‑76 (MQ=255) cACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTaa > 1:172639/1‑76 (MQ=255) | CATTCCATGAGCTATCCAGAGATGGAGAAATATATCTGGCAAGCAAATCTGGAGTATTAATCTTATCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAA > REL606/2037221‑2037368 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |