| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 100 (1.910) | 65/144 | 0.0 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 95 (1.820) | 68/144 | 0.0 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
AAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772782‑2772924 | aaaTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCa > 2:1579791/1‑76 (MQ=255) aTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATa < 1:1141566/76‑1 (MQ=255) aTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATa < 1:1230933/76‑1 (MQ=255) aTTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCt > 2:1697642/1‑76 (MQ=255) ttCATCGTGATGACCGGTTTATCCCCCCCGGCGCGGGGGGCAACCCCAACGGGGGGGGGAAAAACACCAAACgcgc > 1:1310826/1‑76 (MQ=255) cATCGTGATGACCGGTTTATCCCCCCCGGCGCGGGGGAAACCCTGTAC‑‑GGGGGGGGAAAAACCCATAAGCGCTAAc > 1:598720/1‑76 (MQ=25) tCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACtt < 2:129242/76‑1 (MQ=255) cGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTa < 1:196146/76‑1 (MQ=255) tgatgaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGGAAAACCCCATAAGCGCTAACTTAAg > 1:1280824/1‑76 (MQ=255) tgatgaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAg < 2:882651/76‑1 (MQ=255) atgaCCGGTTTATCCCCGCTGGCGCGGGGAAAACCCTGAAC‑‑GGTGGGGAAAAACCCCCTAAGGGGTAACTTAAggg > 2:628970/1‑76 (MQ=37) aCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTtg < 1:611141/76‑1 (MQ=255) ggTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTgg > 2:1373930/1‑76 (MQ=255) gTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGt < 1:1503704/76‑1 (MQ=255) tttATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa > 1:1066949/1‑76 (MQ=255) tttATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa > 2:1337303/1‑76 (MQ=255) tttATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa > 2:509241/1‑76 (MQ=255) ttATCCCCGCTGGCGCGGGGGACACCCTGAAC‑‑GGGGGGGGAAAACCCCATAAGCGCTAACTTAAGGGGTGTGGTAt > 2:610393/1‑76 (MQ=25) tagccccGCGGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:1286422/73‑1 (MQ=255) tagccccGATGGCTCGGGGAACACACTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 2:632017/73‑1 (MQ=25) tATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATATGCGCTAACTTAAGGGTTGTGGTAtt > 2:362147/1‑76 (MQ=255) tATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt > 2:466211/1‑76 (MQ=255) tATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:1286403/76‑1 (MQ=255) aTCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa < 1:290250/76‑1 (MQ=255) aTCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa < 2:701189/76‑1 (MQ=255) aTCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa < 1:1587504/76‑1 (MQ=255) aTCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGCGGGGAAAAACCCCATAAGCGGTAACTTAAGGGTTGTGGTATTa > 2:1538281/1‑76 (MQ=255) tGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGat > 1:1423487/1‑76 (MQ=255) ggCGCGGGGTACACCCTGAAC‑‑GGTGGGGAAAAACCCGGTAAGTGCTAACTTAAGGGATGTGGCATGACGCCTGatg > 2:413363/1‑75 (MQ=255) cgcgGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg < 1:1566458/76‑1 (MQ=255) cgcgGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg > 1:695398/1‑76 (MQ=255) cgGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt > 1:497965/1‑76 (MQ=255) acacCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACg > 2:1315544/1‑76 (MQ=255) acacCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACg > 2:239254/1‑76 (MQ=255) cacCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGt > 2:1411133/1‑76 (MQ=255) cacCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGt < 2:1683046/76‑1 (MQ=255) acCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg < 1:824845/76‑1 (MQ=255) ccTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGcc > 2:1525218/1‑76 (MQ=255) cTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg > 1:210646/1‑76 (MQ=255) tGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGa < 2:517892/76‑1 (MQ=255) aaC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg > 2:1097727/1‑76 (MQ=255) aC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:1172954/76‑1 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt < 2:451318/76‑1 (MQ=255) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa > 2:1115998/1‑76 (MQ=40) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa < 1:31551/76‑1 (MQ=40) ggggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc < 1:247530/76‑1 (MQ=39) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa < 2:1274296/76‑1 (MQ=31) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa < 1:672296/76‑1 (MQ=31) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa > 1:1368627/1‑76 (MQ=31) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa > 1:109451/1‑76 (MQ=31) | AAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772782‑2772924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |