New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	2041277 =	34 (0.620)	7 (0.140)	7/136	5.0	13.9%	coding (107/1113 nt)	vioA	VioA, involved in dTDP‑N‑acetylviosamine synthesis
	?	REL606	2041470 =	56 (1.130)					coding (1351/1428 nt)	wzx	O antigen translocase (Wzx)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAA  >  REL606/2041395‑2041545                                                                            |                                                                            aTTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGc                                                                             <  1:880230/76‑1 (MQ=255) aTTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGc                                                                             <  1:880213/76‑1 (MQ=255)  tttttttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCa                                                                            <  1:1323043/76‑1 (MQ=255)  tttttttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCa                                                                            <  1:1480841/76‑1 (MQ=255)   ttttttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCAt                                                                           <  1:681911/76‑1 (MQ=255)     ttttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCAttt                                                                         >  2:969764/1‑76 (MQ=255)      tttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTta                                                                        <  1:1025875/76‑1 (MQ=255)       ttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTtaa                                                                       >  1:1065839/1‑76 (MQ=255)       ttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTtaa                                                                       <  1:811202/76‑1 (MQ=255)        tataAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTtaat                                                                      <  1:191427/76‑1 (MQ=255)        tataAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTtaat                                                                      <  1:1432035/76‑1 (MQ=255)         gtaAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTtaata                                                                     >  2:314672/2‑76 (MQ=255)           aaGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATaaa                                                                   <  1:1048652/76‑1 (MQ=255)           aaGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATaaa                                                                   <  1:832323/76‑1 (MQ=255)           aaGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATaaa                                                                   <  1:465283/76‑1 (MQ=255)              agaAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATa                                                                >  2:1143902/1‑76 (MQ=255)              agaAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATa                                                                <  1:309228/76‑1 (MQ=255)                aaaTAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGt                                                              <  1:1404276/76‑1 (MQ=255)                  ataataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTaa                                                            <  1:1565181/76‑1 (MQ=255)                  ataataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTaa                                                            >  2:1661893/1‑76 (MQ=255)                   taataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTaaa                                                           >  2:1024962/1‑76 (MQ=255)                    aataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAat                                                          <  1:24023/76‑1 (MQ=255)                    aataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAat                                                          <  1:944486/76‑1 (MQ=255)                    aataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAat                                                          <  1:1252884/76‑1 (MQ=255)                      taGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatat                                                        <  1:1207901/76‑1 (MQ=255)                      taGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatat                                                        <  1:501473/76‑1 (MQ=255)                        gTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatatta                                                      <  1:1631235/76‑1 (MQ=255)                        gTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatatta                                                      >  1:358756/1‑76 (MQ=255)                         tCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattat                                                     <  2:1132744/76‑1 (MQ=255)                         tCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattat                                                     <  1:852841/76‑1 (MQ=255)                         tCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattat                                                     <  1:1369907/76‑1 (MQ=255)                          cATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattata                                                    <  2:886280/76‑1 (MQ=255)                             aaaTATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATAttt                                                 <  1:302102/76‑1 (MQ=255)                              aaTATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGGATTTAATAAAATAGTAAATATTATATTta                                                <  1:206642/76‑1 (MQ=255)                              aaTATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGGATTTAATAAAATAGTAAATATTATATTta                                                <  1:206659/76‑1 (MQ=255)                               atatTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaa                                               <  1:649908/76‑1 (MQ=255)                                tatTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaat                                              <  1:50773/76‑1 (MQ=255)                                  tttCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaataa                                            <  2:1350293/76‑1 (MQ=255)                                  tttCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaataa                                            <  1:882581/76‑1 (MQ=255)                                   ttCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATaaa                                           <  1:709712/76‑1 (MQ=255)                                   ttCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATaaa                                           >  1:1237674/1‑76 (MQ=255)                                        tGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTc                                      <  1:1546099/76‑1 (MQ=255)                                         gTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTcc                                     <  2:1132172/76‑1 (MQ=255)                                           aCATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCAt                                   <  1:48206/76‑1 (MQ=255)                                            cATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATa                                  >  1:733929/1‑76 (MQ=255)                                            cATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATa                                  <  1:133082/76‑1 (MQ=255)                                            cATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATa                                  <  1:1390996/76‑1 (MQ=255)                                             aTAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATAc                                 >  2:397786/1‑76 (MQ=255)                                               aaTTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACtt                               <  1:788467/76‑1 (MQ=255)                                                 ttCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTAt                             >  1:1141135/1‑76 (MQ=255)                                                  tCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTAtt                            <  1:28148/76‑1 (MQ=255)                                                    gAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTc                          <  1:490474/76‑1 (MQ=255)                                                        tAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCAttt                      <  1:1362683/76‑1 (MQ=255)                                                                tGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAAtata              >  2:1148737/1‑76 (MQ=255)                                                                tGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAAtata              >  2:1518614/1‑76 (MQ=255)                                                                  tatataATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGt            <  2:1274211/76‑1 (MQ=255)                                                                       aaTGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGaa       <  1:1578294/76‑1 (MQ=255)                                                                          ggCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCt    >  1:1673396/1‑76 (MQ=255)                                                                            cATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTaa  <  2:1321906/76‑1 (MQ=255)                                                                            cATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTaa  <  2:1696174/76‑1 (MQ=255)                                                                            |                                                                            ATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAA  >  REL606/2041395‑2041545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.