Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 3,733,719 | 0 | C | G | 31.2% | 61.8 / 13.0 | 32 | G63G (GGC→GGG) | gumD | ADP‑L‑glycero‑D‑mannoheptose‑6‑epimerase, NAD(P)‑binding |
Reads supporting (aligned to +/- strand): ref base C (1/21); new base G (10/0); total (11/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.71e-07 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCAAGT > REL606/3733644‑3733792 | gTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTAtggctggc < 1:1358897/76‑1 (MQ=255) tgAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAaga < 2:1479962/76‑1 (MQ=255) gAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAagag < 1:1572963/76‑1 (MQ=255) aaCCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGagagg > 1:1687957/1‑75 (MQ=255) ccTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTc > 1:1100450/1‑76 (MQ=255) cTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCg < 2:967292/76‑1 (MQ=255) gtggGTCCGAATATCGCAGTCTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCg < 2:254944/76‑1 (MQ=255) gtggATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCg < 1:1447171/76‑1 (MQ=255) tggATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGCAGAGGTCGGCgg > 1:1067705/1‑75 (MQ=255) cTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCg < 1:817555/76‑1 (MQ=255) tGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGGAGAGGTCGGGGCTGTCGa > 2:1556238/1‑76 (MQ=255) gAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTTGGCGGTGTCGaa > 1:1628003/1‑76 (MQ=255) gAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTCGGCGAGGTCgca > 1:324449/1‑74 (MQ=255) gAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGaa < 2:834701/76‑1 (MQ=255) aaTATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGAAGGGGTCGGGGATGGCGAAg > 2:1144762/1‑76 (MQ=255) atCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGa < 2:1414670/76‑1 (MQ=255) gCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGAttt < 2:1377068/76‑1 (MQ=255) cAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTCGGGGGTGTCGAAGCGAtttt > 1:144971/1‑76 (MQ=255) aGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGAAGAGGTTGGGGAGGGCGGAGGGGTTTTc > 1:412944/1‑76 (MQ=255) tataTGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACg < 1:1169263/76‑1 (MQ=255) atatGGATAAGGAAGATTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGa < 2:472532/76‑1 (MQ=255) atatGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTTGGCGGGGTCGGAGCGGTTTTTCACGa > 2:1611328/1‑76 (MQ=255) atGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTTGGCGGTGTCGGAGGGATTTTCCACGAAg > 1:544340/1‑76 (MQ=255) gATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTCGGCGGTGTCGAAGGGATTTTTCACCAAGgcg > 2:1610380/1‑76 (MQ=255) gATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGgcg < 2:1667802/76‑1 (MQ=255) aTAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTCGGCGATGTCGAAGCGGTTTTTCACGAAAgcgc > 2:1022334/1‑76 (MQ=255) aaGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTTGGCGATGGCCAAGGGGTTTTTCCCGAAAGGGCCTGctc > 2:163253/1‑76 (MQ=255) aaGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTCGGGGGTGTCGGAGGGGTTTTTCACGAAGGGGCATGctc > 1:1417787/1‑76 (MQ=255) aaGACTTCCTGATCCAGAATATGGCTGGGGGAGAGGTCGGCGATGTCGAAGGGGTTTTTCACGAAGGCGGAGGctc > 2:792003/1‑76 (MQ=255) aaGACGTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGctc < 2:387654/76‑1 (MQ=255) ttCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTcca < 2:929458/76‑1 (MQ=255) ttCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTcca < 2:291913/76‑1 (MQ=255) tCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTccac < 2:1081506/76‑1 (MQ=255) gATCCAGATTATGGCTGGGGGAGAGGTTGGCGGTGTCGGAGCGATTTTTCACGAAGGCGCATGCTCTTcccccccc > 2:808718/1‑76 (MQ=255) gATCCAGATTATGGCTGGGGGAGAGATCGGGGGTGTCGAAGGGGTTTTCCACGAAGGCGCAGGCTCTTcccccccc > 2:1741746/1‑76 (MQ=255) aTCCAGATTATGGCTGGGGAAGAGTTCGGCGGTGTCGAAGCGATTTTTCACGAAAGCGCATGCTCTTCCaccaccc > 2:1589169/1‑75 (MQ=255) tCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGa < 1:1506314/76‑1 (MQ=255) cAGATTATGGCTGGGGGAGAGTTGGGCGGAGTCGAAGCGAGTTTTCACGAAAGCGCATGGTCTTCCCCCCCCCAgg > 2:1301654/1‑75 (MQ=255) cAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGt < 1:980892/76‑1 (MQ=255) cAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGt < 2:439108/76‑1 (MQ=255) tATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGAt < 2:1650316/76‑1 (MQ=255) aTGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATg < 2:228653/76‑1 (MQ=255) gctggcGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCa < 1:1131563/76‑1 (MQ=255) gctggcGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCa < 2:1362892/76‑1 (MQ=255) gctggcGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCa < 2:1562630/76‑1 (MQ=255) ctggcGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCaa < 2:1169408/76‑1 (MQ=255) tggcGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCAAg > 1:102710/1‑76 (MQ=255) ggcGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCAAGt < 1:936977/76‑1 (MQ=255) | GTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCAAGT > REL606/3733644‑3733792 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |