| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 1,345,210 | (T)8→7 | intergenic (‑98/+137) | yciR ← / ← rnb | modulator of Rnase II stability/exoribonuclease II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,345,203 | 0 | T | . | 96.5% | 133.2 / ‑3.8 | 29 | intergenic (‑91/+144) | yciR/rnb | modulator of Rnase II stability/exoribonuclease II |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (6/22); total (7/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.41e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCAGTTAAAA > REL606/1345128‑1345272 | gTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGt < 2:749027/76‑1 (MQ=255) tAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGttt < 2:789912/76‑1 (MQ=255) aaCAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGGTAAACGCATCGtttt > 2:726520/1‑76 (MQ=255) aaCAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGtttt < 2:1164029/76‑1 (MQ=255) cAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGtttttt < 2:558598/76‑1 (MQ=255) cGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTGAACGCGGTGtgttttttt > 2:1565666/1‑75 (MQ=255) cGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGttttttttt > 1:419927/1‑75 (MQ=255) gAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGtttttttttat > 1:1122664/1‑73 (MQ=255) tCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATAtatt < 1:863833/76‑1 (MQ=255) tCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATAtatt < 1:1439971/76‑1 (MQ=255) cgcgGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATAtattta < 1:331986/76‑1 (MQ=255) cgcgGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATAtattta < 1:1224854/76‑1 (MQ=255) ggTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTT‑TATatttattt > 2:623142/1‑76 (MQ=255) taaataaaAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTa < 2:1092046/76‑1 (MQ=255) taaaAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATcc < 2:366652/76‑1 (MQ=255) taaaAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATcc < 2:236449/76‑1 (MQ=255) taaaAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATcc < 2:1435028/76‑1 (MQ=255) taaaAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATcc < 2:1283911/76‑1 (MQ=255) taaaAGGAACAACATGACTTACATGAAATTAACGGCGGCCAAACGCCTT‑ATTTTTTTATTTATTTATTTTTAATcc > 2:817546/1‑76 (MQ=255) aaaaGGAACAACATGACTTACATGAAATTAACGGCGGCTAAAAGCATTGCTTTTTTT‑TATATTTTTTTGTAATTCa > 2:1093848/1‑76 (MQ=255) aaaGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAg < 2:107859/76‑1 (MQ=255) acaacaTGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTgg < 2:625030/76‑1 (MQ=255) tGACTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAAc < 1:807204/76‑1 (MQ=255) aCTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGc < 1:1481337/76‑1 (MQ=255) aCTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGc < 1:188598/76‑1 (MQ=255) aCTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGc < 1:436674/76‑1 (MQ=255) cTTACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGcc < 1:1216618/76‑1 (MQ=255) ttACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCa < 1:1331128/76‑1 (MQ=255) tACATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAg < 2:583898/76‑1 (MQ=255) cATGAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGtt < 1:163431/76‑1 (MQ=255) tGAAATTAACGGCGGCTAAACGCATT‑TTTTTTTTTTTTTTTTTTTTTTAATTCAGTTTTTGTAAAAAACCAGtttt > 1:844466/1‑76 (MQ=255) gAAATTAACGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTc < 1:679333/76‑1 (MQ=255) aCGGCGGCTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGaa < 1:1201514/76‑1 (MQ=255) gcggcTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGt < 2:770194/76‑1 (MQ=255) gcTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCAg > 1:107206/1‑76 (MQ=255) gcTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCAg > 1:692001/1‑76 (MQ=255) cTAAACGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCAGt > 1:804747/1‑76 (MQ=255) aaaCGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCAGTTa > 2:860347/1‑76 (MQ=255) aaaCGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCAGTTa > 1:493974/1‑76 (MQ=255) cGCATTG‑TTTTTTTATATATTTATTTGTAATCCAGTTTTGGCACAACGCCAGTTTTCAAACGAAAGTCAGTTaaaa > 2:570717/1‑76 (MQ=255) | GTTAACAGCGGAGTCCGCGGTTAAATAAAAGGAACAACATGACTTACATGAAATTAACGGCGGCTAAACGCATTGTTTTTTTTATATATTTATTTGTAATCCAGTTTTGGAAAAACGCCAGTTTTCAAACGAAAGTCAGTTAAAA > REL606/1345128‑1345272 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |