| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893615–3894994 | 3901930 | 6937–8316 | 12 [11] | [0] 59 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3652533 | NA (NA) | 58 (1.150) | 41/146 | 0.1 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652457‑3652533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAA > REL606/3901931‑3902004 GGTCTGGCTCCAATTGAATATCGGGATCAGTCCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:1527869/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:762276/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:575503/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:1424751/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:1288283/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:698086/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:1151117/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:458611/1‑76 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:1479435/76‑1 TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:1232153/76‑1 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT < 1:1488651/76‑1 CTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGC < 2:259809/76‑1 CTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGC < 2:272662/76‑1 CTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGC < 2:441883/76‑1 TCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC > 2:278674/1‑76 TCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC > 1:1219881/1‑76 CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC < 1:687191/76‑1 CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCA > 1:1253842/1‑76 AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAG < 2:24961/76‑1 AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAG < 2:1258379/76‑1 TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG > 1:513681/1‑76 GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGA > 1:441530/1‑76 ATATCGGAATCAGGCCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACC < 2:393023/76‑1 TCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGC < 2:1244140/76‑1 TCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGC < 2:1244131/76‑1 CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCA > 2:1598767/1‑76 CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCA > 2:658336/1‑76 TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCG < 2:285082/76‑1 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC > 2:794547/1‑76 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCA < 1:389150/76‑1 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCA < 2:758948/76‑1 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAA < 1:1443067/76‑1 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAA > 2:714630/1‑76 CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAG < 2:954814/76‑1 CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAG < 1:576113/76‑1 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAA < 1:1193409/76‑1 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC < 1:418681/76‑1 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC < 1:418679/76‑1 GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGG > 1:289942/1‑76 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCC > 1:20680/1‑76 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAA > 2:180269/1‑76 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAT < 2:870648/76‑1 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAT > 1:1220164/1‑76 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAT < 1:1653188/76‑1 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAT < 2:47984/76‑1 TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATT < 1:799231/76‑1 TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTG > 2:836931/1‑76 AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGAGACCAGCACGCCGCCAACAACGGCGACTAAAATTGG > 1:1338676/1‑76 TGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCC < 1:1218052/76‑1 GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCC > 2:1393609/1‑76 TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCA < 2:774297/76‑1 TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCA < 1:1414670/76‑1 TTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACC < 2:1320717/76‑1 TTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCG < 1:1556979/76‑1 TTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCG > 1:844850/1‑76 GGGGTCAGTACAGGTTGCCCAGGTGATCAGCACGCCGCTAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGC > 1:641748/1‑76 GGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCAT < 1:1658244/76‑1 GGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCAT < 2:61451/76‑1 GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATG < 2:1617703/76‑1 GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATG < 1:114722/76‑1 GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATG < 1:1110094/76‑1 GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATG < 1:1069555/76‑1 AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGATCCGGCATGGCG > 2:1357460/1‑76 AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCG < 1:214544/76‑1 TACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGAC > 2:602274/1‑76 TACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGAC < 2:867807/76‑1 ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACA < 2:690047/76‑1 CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAA < 2:456192/76‑1 GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652457‑3652533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAA > REL606/3901931‑3902004 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |