| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 1312267 = | 55 (0.990) | 4 (0.080) | 4/132 | 5.6 | 7.3% | intergenic (+15/+45) | yciD/yciE | outer membrane protein W/hypothetical protein |
| ? | REL606 | 1312288 = | 54 (1.100) | intergenic (+36/+24) | yciD/yciE | outer membrane protein W/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTCGCTCTGAAACTGATGGCGTAGAAGCGAAGAAATAATACCCTTTATACCATGTCCTTATTGACCCCGTATATTACGGGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1312350‑1312267‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacggggtcAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTC > REL606/1312288‑1312362 ATTCGCTCTGAAACTGATGGCGTAGAAGCGAAGAAATAATACCCTTTATACCATGTCCTTATTGACCCCGTATATT < 1:1520179/76‑1 TCGCTCTGAAACTGATGGCGTAGAAGCGAAGAAATAATACCCTTTATACCATGTCCTTATTGACCCCGTATATTAC < 1:328568/76‑1 CGCTCTGAAACTGATGGCGTAGAAGCGAAGAAATAATACCCTTTATACCATGTCCTTATTGACCCCGTATATTACG < 2:38704/76‑1 CGCTCTGAAACTGATGGCGTAGAAGCGAAGAAATAATACCCTTTATACCATGTCCTTATTGACCCCGTATATTACG < 2:149668/76‑1 GCTCTGAAACTGATGGCGTAGAAGCGAAGAAATAATACCCTTTATACCATGTCCTTATTGACCCCGTATATTACGG > 1:1328352/1‑76 CTCTGAAACTGATGGCGTAGAAGCGAAGAAATAATACCCTTTATACCATGTCCTTATTGACCCCGTATATTACGGG > 1:813313/1‑76 TCTGAAACTGATGGCGTAGAAGCGAAGAAATAATACCCTTTATACCATGTCCTTATTGACCCCGTATATTACGGGG < 2:1618670/76‑1 TGAAACTGATGGCGTAGAAGCGAAGAAATAATACCCTTTATACCATGTCCTTATTGACCCCGTATATTACGGGGTC > 1:1184736/1‑76 TGAAACTGATGGCGTAGAAGCGAAGAAATAATACCCTTTATACCATGTCCTTATTGACCCCGTATATTACGGGGTC < 2:732338/76‑1 TGAAACTGATGGCGTAGAAGCGAAGAAATAATACCCTTTATACCATGTCCTTATTGACCCCGTATATTACGGGGTC > 1:1517903/1‑76 ACCATGTCCTTATTGACCCCGTATATTACGGGGTCAATAAGGACATGGT < 2:1517987/49‑1 ACCATGTCCTTATTGACCCCGTATATTACGGGGTCAATAAGGACATGGT > 1:1517987/1‑49 CATGTCCTTATTGACCCCGTATATTACGGGGTCAATAAGGACATG > 2:1103281/1‑45 CATGCCCTTATTGACCCCGTATATTACGGGGTCAATAAGGACATG < 1:1103281/45‑1 ACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAA > 1:772415/1‑76 TCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCT < 2:1687232/76‑1 CAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTC < 1:336941/76‑1 ATTCGCTCTGAAACTGATGGCGTAGAAGCGAAGAAATAATACCCTTTATACCATGTCCTTATTGACCCCGTATATTACGGGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1312350‑1312267‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacggggtcAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTC > REL606/1312288‑1312362 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |