New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 2056287	56 (1.000)	4 (0.080) +CTTA	4/142	5.9	3.0%	intergenic (‑191/+2)	cpsG/cpsB	phosphomannomutase/mannose‑1‑phosphate guanyltransferase
	?	REL606	4274785 =	219 (3.930)					intergenic (+58/+473)	gltP/yjcO	glutamate/aspartate:proton symporter/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCAGGCCTACAAAACCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATAAGAGCCGGACCGCACTTCAA  >  REL606/2056212‑2056362                                                                            |                                                                            aTCAGGCCTACAAAACCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACg                                                                             >  2:1043721/1‑76 (MQ=255)  tCAGGCCTACAAAACCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGt                                                                            >  2:1341603/1‑76 (MQ=255)   naGGCCTACAAAACCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGtt                                                                           >  1:1588852/2‑76 (MQ=255)   cAGGCCTACAAAACCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGtt                                                                           >  2:406393/1‑76 (MQ=255)    aGGCCTACAAAACCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGttt                                                                          <  2:535088/76‑1 (MQ=255)    aGGCCTACAAAACCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGttt                                                                          <  2:1506056/76‑1 (MQ=255)    aGGCCTACAAAACCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGttt                                                                          >  1:1201475/1‑76 (MQ=255)          aCAAAACCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACAccc                                                                    >  2:837775/1‑76 (MQ=255)          aCAAAACCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACAccc                                                                    >  2:1561178/1‑76 (MQ=255)          aCAAAACCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACAccc                                                                    >  2:1489314/1‑76 (MQ=255)          aCAAAACCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACAccc                                                                    >  1:350797/1‑76 (MQ=255)           cAAAACCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACccg                                                                   <  2:273230/76‑1 (MQ=255)            aaacCCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACccgt                                                                  <  2:703202/76‑1 (MQ=255)            aaaaCCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACccgt                                                                  <  2:1746419/76‑1 (MQ=255)             aaaCCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACccgtc                                                                 >  2:126225/1‑76 (MQ=255)             aaaCCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACccgtc                                                                 >  2:968701/1‑76 (MQ=255)              aaccgaaccgTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACccgtcc                                                                >  2:534532/1‑76 (MQ=255)                ccgaaccgTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACccgtccgt                                                              <  2:1727614/76‑1 (MQ=255)                ccgaaccgTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACccgtccgt                                                              <  2:1223740/76‑1 (MQ=255)                ccgaaccgTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACccgtccgt                                                              >  2:112932/1‑76 (MQ=255)                 cgaaccgTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTa                                                             >  1:555207/1‑76 (MQ=255)                 cgaaccgTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTa                                                             <  2:1004275/76‑1 (MQ=255)                        tAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATcc                                                      >  2:247137/1‑76 (MQ=255)                        tAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATcc                                                      >  2:1168217/1‑76 (MQ=255)                         aGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCcg                                                     >  2:1321309/1‑76 (MQ=255)                          ggTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCcgc                                                    >  1:201750/1‑76 (MQ=255)                             cGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGaa                                                 <  1:894802/76‑1 (MQ=255)                                aTAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAgcg                                              <  1:36012/76‑1 (MQ=255)                                aTAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACCAGTCCGTAGCGATCCGCGAAgcg                                              >  1:1570745/1‑76 (MQ=255)                                          cACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCAcatca                                    >  1:1375216/1‑76 (MQ=255)                                          cACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCAcatca                                    >  2:1727579/1‑76 (MQ=255)                                          cACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCAcatca                                    >  1:179252/1‑76 (MQ=255)                                          cACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCAcatca                                    >  1:405576/1‑76 (MQ=255)                                           aCGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCAcatcat                                   >  2:1272588/1‑76 (MQ=255)                                              ccgcATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATccc                                >  2:1085508/1‑75 (MQ=255)                                               cgcATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCctc                               <  2:1279362/76‑1 (MQ=255)                                                 cATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCtt                             <  1:877563/76‑1 (MQ=255)                                                  aTCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTc                            >  1:401457/1‑76 (MQ=255)                                                      gACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCgaga                        >  1:1638765/1‑76 (MQ=255)                                                       aCAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGAt                       <  1:534532/76‑1 (MQ=255)                                                       aCAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGAt                       >  2:603173/1‑76 (MQ=255)                                                         aaaCAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATaa                     >  1:261910/1‑76 (MQ=255)                                                          aaCAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATAag                    <  2:1524771/76‑1 (MQ=255)                                                          aaCAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATAag                    <  2:1321183/76‑1 (MQ=255)                                                          aaCAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATAag                    <  2:882417/76‑1 (MQ=255)                                                          aaCAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATAag                    <  1:1609791/76‑1 (MQ=255)                                                          aaCAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATAag                    >  2:1523470/1‑76 (MQ=255)                                                           aCAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATAaga                   <  2:1496898/76‑1 (MQ=255)                                                            cAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATAagag                  >  2:178411/1‑76 (MQ=255)                                                               cgcCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATAAGAGCCg               <  2:1027511/76‑1 (MQ=255)                                                                 ccTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATAAGAGCCGGa             <  1:1681319/76‑1 (MQ=255)                                                                 ccTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATAAGAGCCGGa             <  1:832803/76‑1 (MQ=255)                                                                  cTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATAAGAGCCGGAc            <  2:267280/76‑1 (MQ=255)                                                                   tGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATAAGAGCCGGAcc           <  2:259169/76‑1 (MQ=255)                                                                           cGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATAAGAGCCGGACCGCACTTCa   <  2:8328/76‑1 (MQ=255)                                                                            gTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATAAGAGCCGGACCGCACTTCaa  >  1:1632434/1‑76 (MQ=255)                                                                            gTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATAAGAGCCGGACCGCACTTCaa  >  1:1766895/1‑76 (MQ=255)                                                                            |                                                                            ATCAGGCCTACAAAACCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGTTTACACCCGTCCGTAGCGATCCGCGAAGCGCACCACATCATCCTCTTCGAGATAAGAGCCGGACCGCACTTCAA  >  REL606/2056212‑2056362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.