| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3708220 = | 46 (0.820) | 4 (0.090) +GACTATCTTTGTTGA |
4/120 | 5.2 | 8.0% | coding (1247/1914 nt) | mtlA | fused mannitol‑specific PTS enzymes: IIA components/IIB components/IIC components |
| ? | REL606 | = 4302778 | 70 (1.260) | coding (389/1017 nt) | phnD | phosphonate/organophosphate ester transporter subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGCGATGGGCGCAGGCGTTCTGCGTAAGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGAACGCGCTATGCGCCAGGT > REL606/3708145‑3708295 | gTGCGATGGGCGCAGGCGTTCTGCGTAAGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAgcgc > 1:353443/1‑76 (MQ=255) gCGATGGGCGCAGGCGTTCTGCGTAAGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGa < 1:1022516/76‑1 (MQ=255) tGGGCGCAGGCGTTCTGCGTAAGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATcaa > 1:1166731/1‑76 (MQ=255) tGGGCGCAGGCGTTCTGCGTAAGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATcaa < 1:1244385/76‑1 (MQ=255) gggCGCAGGCGTTCTGCGTAAGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATcaac < 1:1018005/76‑1 (MQ=255) ggCGCAGGCGTTCTGCGTAAGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATcaaca < 1:1703962/76‑1 (MQ=255) cgcAGGCGTTCTGCGTAAGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCaacaac > 1:1133557/1‑76 (MQ=255) cAGGCGTTCTGCGTAAGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAAcca < 2:31379/76‑2 (MQ=255) cAGGCGTTCTGCGTAAGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCt > 1:347080/1‑76 (MQ=255) ggCTTTCTGCGTAAGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTgc < 1:379884/76‑1 (MQ=255) cGTTCTGCGTAAGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTgccg < 2:1458254/76‑1 (MQ=255) gTTCTGCGTAAGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTgccgc > 1:572994/1‑76 (MQ=255) gTTCTGCGTAAGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTgccgc > 2:505231/1‑76 (MQ=255) ttCTGCGTAAGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTgccgcc > 2:744086/1‑76 (MQ=255) aaGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTgg > 1:1794205/1‑76 (MQ=255) aGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGa < 2:321613/76‑1 (MQ=255) aaaaTTCAGGATGCAGGTCTGTCGCAGATTTCTTGTGCTAACAGCGCGAGCATCAACCTGCCGCCAGATGTGGccc < 2:1776070/76‑1 (MQ=255) tCAGGATGCAGGTCTGTCTCAGATTCCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGtc < 2:96978/76‑1 (MQ=255) cAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGtca > 2:42275/1‑76 (MQ=255) cAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGtca < 1:1713363/76‑1 (MQ=255) aGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGtcat < 2:235803/76‑1 (MQ=255) ggATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGtcatc < 1:524386/76‑1 (MQ=255) gATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGtcatca > 2:1156927/1‑76 (MQ=255) tGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCAtcact > 1:299318/1‑76 (MQ=255) ggTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCAcc > 2:1315651/1‑76 (MQ=255) catCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCAcc > 2:384114/3‑76 (MQ=255) cTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGtg < 2:1073959/76‑1 (MQ=255) cTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGtg > 1:627773/1‑76 (MQ=255) tGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGtga > 2:129748/1‑76 (MQ=255) gTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGtgac < 1:1306404/76‑1 (MQ=255) gCAGATTTCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGtgacctg < 1:1696032/76‑1 (MQ=255) tttCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGa < 2:7400/76‑1 (MQ=255) ttCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGaa > 2:1291376/1‑76 (MQ=255) tCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGAAc > 1:738177/1‑76 (MQ=255) gTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGAAcgcg < 2:1746397/76‑1 (MQ=255) gTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGAAcgcg > 1:122750/1‑76 (MQ=255) gTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGAAcgcg > 2:680547/1‑76 (MQ=255) gTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGAAcgcg > 1:1497191/1‑76 (MQ=255) tACTAACAGCGAGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGAACGCGCt < 1:1210190/76‑1 (MQ=255) cTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGAACGCGCTAt > 1:1496939/1‑76 (MQ=255) tAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGAACGCGCTATg > 1:1352386/1‑76 (MQ=255) tAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGAACGCGCTATg > 1:311810/1‑76 (MQ=255) aaCAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGAACGCGCTATgc > 1:205545/1‑76 (MQ=255) gcgcGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACACACCGTGACCTGACCGAACGCGCTATGCGCCa > 2:1188613/1‑76 (MQ=255) cgcgATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGAACGCGCTATGCGCCAg < 2:1524979/76‑1 (MQ=255) cgcgATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGAACGCGCTATGCGCCAg < 2:1163032/76‑1 (MQ=255) cgATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGAACGCGCTATGCGCCAGGt < 1:1381474/76‑1 (MQ=255) cgATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGAACGCGCTATGCGCCAGGt < 2:1143236/76‑1 (MQ=255) | GTGCGATGGGCGCAGGCGTTCTGCGTAAGAAAATTCAGGATGCAGGTCTGTCGCAGATTTCTGTTACTAACAGCGCGATCAACAACCTGCCGCCAGATGTGGACCTCGTCATCACTCACCGTGACCTGACCGAACGCGCTATGCGCCAGGT > REL606/3708145‑3708295 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |