| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041054 = | 44 (0.890) | 7 (0.160) | 5/136 | 5.0 | 12.6% | coding (330/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041468 = | 57 (1.270) | coding (1353/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGTTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTT > REL606/2040979‑2041123 | tgtTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAata < 1:1018423/76‑1 (MQ=255)tgtTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAata < 1:1018429/76‑1 (MQ=255) gtTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAatat < 2:1473068/76‑1 (MQ=255) gtTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAatat > 1:492885/1‑76 (MQ=255) aGTAGCAAGGGACGGGTAAAATTGCTGAGGTTTTTGGGGAAATAGCCTGTTCTATTTTTCTGTAATCAATATtata < 1:1515784/76‑1 (MQ=255) gTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTatat > 1:319764/1‑76 (MQ=255) aGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATcc > 1:1565295/1‑76 (MQ=255) cAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCcat > 1:1041452/1‑76 (MQ=255) cAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCcat < 1:931083/76‑1 (MQ=255) cAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCcat < 1:931081/76‑1 (MQ=255) cAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCcat > 1:906852/1‑76 (MQ=255) aaTGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCcatc < 1:1253636/76‑1 (MQ=255) cgaGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCAtttt > 2:630427/3‑76 (MQ=255) gaGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTc > 2:1389123/2‑76 (MQ=255) cAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTc < 1:790199/76‑1 (MQ=255) cAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTc < 1:365148/76‑1 (MQ=255) aTTGCTGAAGTTTTTGTTGTAATAGCCGGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATAAcaa < 1:906845/76‑1 (MQ=255) ttGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATcaac < 1:761177/76‑1 (MQ=255) tGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATcaaca < 1:185423/76‑1 (MQ=255) tgtGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATcaacaa > 2:888771/3‑76 (MQ=255) gCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATcaacaa < 1:1004235/76‑1 (MQ=255) cTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACaaa > 1:400808/1‑76 (MQ=255) tGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAg < 1:541574/76‑1 (MQ=255) tGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAg < 1:923660/76‑1 (MQ=255) aaGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGAc < 1:191122/76‑1 (MQ=255) aaGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGAc < 1:191112/76‑1 (MQ=255) aaGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGAc < 2:120747/76‑1 (MQ=255) aGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACa < 1:1523245/76‑1 (MQ=255) aGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACa < 1:1523231/76‑1 (MQ=255) tttGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCg > 2:1568421/1‑76 (MQ=255) tgtAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGt > 1:255707/1‑76 (MQ=255) gtAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtc < 2:694120/76‑1 (MQ=255) tCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaaaa > 1:1496159/1‑76 (MQ=255) cTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAAt > 2:149950/1‑76 (MQ=255) ttttCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCa > 2:928289/1‑76 (MQ=255) ttttCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCa < 1:824160/76‑1 (MQ=255) tGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGa < 2:160114/76‑1 (MQ=255) gTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGaa < 1:1553104/76‑1 (MQ=255) aTCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGtt < 1:869685/76‑1 (MQ=255) aTCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGtt < 2:180189/76‑1 (MQ=255) aTCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGtt < 2:180196/76‑1 (MQ=255) aTCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGtt > 1:744430/1‑76 (MQ=255) aTCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGtt < 1:727053/76‑1 (MQ=255) aTCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGtt < 1:1036327/76‑1 (MQ=255) | TGTTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTT > REL606/2040979‑2041123 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |