| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 1,289,460 | Δ611 bp | [ychK]–[hnr] | [ychK], [hnr] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 1289460 | 1290070 | 611 | 60 [1] | [1] 58 | [ychK]–[hnr] | [ychK],[hnr] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1289459 | 1 (0.020) | 57 (1.100) | 40/150 | 0.2 | 98.3% | coding (460/945 nt) | ychK | hypothetical protein |
| ? | REL606 | 1290071 = | 1 (0.020) | coding (36/1014 nt) | hnr | response regulator of RpoS | |||||
AGTACGGGACGTGAATTATGGTTTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1289387‑1289459‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGC > REL606/1290071‑1290145 AGTACGGGACGTGAATTATGGTTTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGT > 1:452796/1‑76 CGGGACGTGAATTATGGTTTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAA > 2:20960/1‑76 GGACGTGAATTATGGTTTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGA > 1:1550303/1‑76 ACGTGAATTATGGTTTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATG < 2:9954/76‑1 ACGTGAATTATGGTTTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATG < 2:414970/76‑1 AATTATGGTTTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAG < 1:625576/76‑1 AATTATGGTTTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAG > 2:926647/1‑76 ATTATGGTTTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGG < 2:379226/76‑1 ATGGTTTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTAT < 2:47320/76‑1 ATGGTTTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTAT > 1:398248/1‑76 GGTTTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTT < 1:242170/76‑1 GGTTTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTT < 1:1627594/76‑1 GTTTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTC > 1:747298/1‑76 TTTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCG > 1:304773/1‑76 TTTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCG > 2:1304861/1‑76 TTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGC > 1:733248/1‑76 TACTGAAGGCGATCTCCATCTTGCTATTCGCGCATTATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCT < 1:223367/76‑1 TACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCT > 2:742987/1‑76 TACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCT > 2:1525385/1‑76 ACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTC > 2:1154259/1‑76 AAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTT > 2:1649818/1‑76 AGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTC > 2:419822/1‑76 CGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGG < 1:74398/76‑1 ATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGAT > 2:239639/1‑76 CTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTC < 2:1525927/76‑1 CTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTC > 1:1043418/1‑76 CTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTC < 1:242429/76‑1 TCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCA < 1:1015677/76‑1 TCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCA < 1:15886/76‑1 TCCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCA < 1:1626140/76‑1 CCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCAT > 2:1477625/1‑76 CCATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCAT > 2:634397/1‑76 ATCTTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGG < 2:1201559/76‑1 TTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTT < 2:1201030/76‑1 TTGCTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTT > 2:1550995/1‑76 CTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCC > 2:890253/1‑76 CTATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCC > 2:411585/1‑76 TATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCT < 2:507974/76‑1 nTTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTC > 1:470232/2‑76 ATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTC > 2:1567882/1‑76 ATTCGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTC > 2:770367/1‑76 CGCGCATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATT < 1:565920/76‑1 CATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGA > 1:482193/1‑76 CATCATGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGA > 1:467684/1‑76 TGCAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGAC < 1:198016/76‑1 CAGTTTTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAA > 2:972917/1‑76 CAGTTTTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAA > 2:972927/1‑76 CAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAA < 1:1261883/76‑1 CAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAA > 1:1255019/1‑76 CAGTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAA < 1:1070980/76‑1 GTATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACG < 1:113073/76‑1 TATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGG > 2:110827/1‑76 ATTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGT < 1:848690/76‑1 TTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTA < 1:444451/76‑1 TTCCAGTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTA < 2:81849/76‑1 GTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGC < 1:43800/76‑1 GTGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGC < 1:829302/76‑1 AGTACGGGACGTGAATTATGGTTTACTGAAGGCGATCTCCATCTTGCTATTCGCGCATCATGCAGTATTCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1289387‑1289459‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTGAAGATGAGCAGGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACTGGC > REL606/1290071‑1290145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |