| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893618–3894994 | 3901930 | 6937–8313 | 15 [14] | [0] 62 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3652533 | NA (NA) | 58 (1.150) | 48/146 | 0.0 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
ATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCTGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > REL606/3901856‑3902005 | tctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacag < 2:105926‑M2/1‑1 (MQ=255) tgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGt < 1:1223498‑M2/3‑1 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGtt > 1:1237248‑M2/73‑76 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaattttttgggtcagtacaGGGTg > 2:1097744‑M2/72‑76 (MQ=255) actccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTg > 1:1134270‑M2/72‑76 (MQ=255) actccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTg < 1:36075‑M2/5‑1 (MQ=255) ctccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGc > 2:522403‑M2/71‑76 (MQ=255) ccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGccc > 1:279916‑M2/69‑76 (MQ=255) caattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCa < 2:923577‑M2/9‑1 (MQ=255) aattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAg < 1:1244675‑M2/10‑1 (MQ=255) aattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAg > 2:638527‑M2/67‑76 (MQ=255) attgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAgg > 2:1440594‑M2/66‑76 (MQ=255) attgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAgg > 1:338033‑M2/66‑76 (MQ=255) ttgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGt < 2:1355367‑M2/12‑1 (MQ=255) tgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTg < 2:538814‑M2/13‑1 (MQ=255) tgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTg > 1:812148‑M2/64‑76 (MQ=255) gaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGa < 2:1237853‑M2/14‑1 (MQ=255) gaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGa < 2:422297‑M2/14‑1 (MQ=255) aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGAc > 2:1050485‑M2/62‑76 (MQ=255) tatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCa < 1:1304623‑M2/17‑1 (MQ=255) tcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGc < 2:851243‑M2/19‑1 (MQ=255) tcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGc < 2:202317‑M2/19‑1 (MQ=255) cggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCa > 1:1430280‑M2/57‑76 (MQ=255) gaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCAcg > 1:751025‑M2/55‑76 (MQ=255) atcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCAcgcc < 1:892266‑M2/24‑1 (MQ=255) tcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCAcgccg > 2:837966‑M2/52‑76 (MQ=255) tcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCAcgccg > 2:733093‑M2/52‑76 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACgccgcc < 2:186107‑M2/27‑1 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCa < 2:1205337‑M2/28‑1 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCaa > 2:1408895‑M2/48‑76 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAg < 2:900177‑M2/30‑1 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAg < 2:1536161‑M2/30‑1 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAg > 1:1273727‑M2/47‑76 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGa > 2:929243‑M2/46‑76 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGa < 1:280615‑M2/31‑1 (MQ=255) tatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACg < 1:1473649‑M2/34‑1 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACgg < 2:1172709‑M2/35‑1 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACggg < 2:593006‑M2/36‑1 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGc > 1:17296‑M2/39‑76 (MQ=255) tgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTaaa < 2:581849‑M2/43‑1 (MQ=255) gtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCCAGAACGGGGCCTaaaa > 1:173776‑M2/33‑76 (MQ=255) gtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGTCTaaaa < 1:1013207‑M2/44‑1 (MQ=255) gtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTaaaa > 2:284570‑M2/33‑76 (MQ=255) tccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCcca < 2:124941‑M2/53‑1 (MQ=255) ccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccac > 1:1397294‑M2/23‑76 (MQ=255) caactttttggggtcagtacaGGTTGCCCAGGTGATCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccacc < 2:52285‑M2/55‑1 (MQ=255) caactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccacc > 2:1650099‑M2/22‑76 (MQ=255) aactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccacca < 2:553737‑M2/56‑1 (MQ=255) actttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAg < 2:332224‑M2/57‑1 (MQ=255) ctttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGa < 2:106138‑M2/58‑1 (MQ=255) tttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGAccc < 2:788095‑M2/61‑1 (MQ=255) gggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCa > 1:604868‑M2/12‑76 (MQ=255) gggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCa > 1:991401‑M2/12‑76 (MQ=255) ggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCAt < 2:868576‑M2/66‑1 (MQ=255) tcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATgg < 2:1294305‑M2/68‑1 (MQ=255) gtacaGGTTGCCCAGGTGCCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGa < 1:560574‑M2/71‑1 (MQ=255) acaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGcgaaa > 2:767943‑M2/4‑74 (MQ=255) acaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACa > 2:1165778‑M2/4‑76 (MQ=255) taGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACaa > 2:341902‑M2/3‑76 (MQ=255) caGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACaa > 2:236871‑M2/3‑76 (MQ=255) aGGTTGCCCATGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACaaa < 2:777080‑M2/75‑1 (MQ=255) aGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACaaa < 1:281522‑M2/75‑1 (MQ=255) | ATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCTGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > REL606/3901856‑3902005 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |