| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 1,886,183 | A→G | intergenic (‑13/+656) | yobF ← / ← yebO | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,886,183 | 0 | A | G | 97.4% | 296.5 / ‑3.6 | 77 | intergenic (‑13/+656) | yobF/yebO | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (30/45); total (31/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
AGAGAAGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGTCTCGAT > REL606/1886108‑1886255 | agagAAGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTa > 1:923710/1‑76 (MQ=255) agaAGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGcc > 1:1508838/1‑76 (MQ=255) gaAGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCt < 2:1897911/76‑1 (MQ=255) aaGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACATAACTGTGCCTc < 1:113791/76‑1 (MQ=255) aaGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTCTGCCTc < 2:1968990/76‑1 (MQ=255) gTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATACACAGAACTGTGCCTTGTTTa < 1:123250/76‑1 (MQ=255) gTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTa > 2:621066/1‑76 (MQ=255) tATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTaa < 2:550439/76‑1 (MQ=255) ttaaacgtcaacgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAAcc > 1:1877718/4‑76 (MQ=255) ttCAACCTCANCGAGTTTACTNAGGACTTCTTTAATGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAAcc > 2:2007282/1‑76 (MQ=255) aacgtcaacgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGa > 2:907335/1‑76 (MQ=255) aacgtcaacgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGa > 2:710027/1‑76 (MQ=255) aacgtcaacgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGa < 1:898509/76‑1 (MQ=255) aacgtcaacgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGa > 1:787702/1‑76 (MQ=255) cgtcaacgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGaaa < 1:221822/76‑1 (MQ=255) gtcaacgtGTTGCCTCATAGCTTCTATACTGAAAATGCCAAACATAAACAGAACTGTGCCTCGTTTATCCCGAAAt < 2:45464/76‑1 (MQ=255) caacgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCt > 1:922679/1‑76 (MQ=255) acgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGt < 1:834578/76‑1 (MQ=255) cgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGtt < 2:204484/76‑1 (MQ=255) gtgtTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTa < 2:426818/76‑1 (MQ=255) gtgtTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTa > 2:1943282/1‑76 (MQ=255) gtgtTTACTCAGGACATCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTa > 1:187856/1‑76 (MQ=255) tgtTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTAt < 1:455680/76‑1 (MQ=255) tgtTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTAt < 2:1939047/76‑1 (MQ=255) gtTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATc > 1:1439063/1‑76 (MQ=255) gtTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAAACGGTTATc < 1:1901700/76‑1 (MQ=255) gtTTACTCAGGACTTCTAGACTGATAGTCGCACACATAACCAGCACTGAGCCTCGTTTAAACCGAAATCTGCTATc > 1:2047243/1‑76 (MQ=255) gtTTACACATGACTTCTGCACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACNCGNAATCTGTTATc > 2:318390/1‑76 (MQ=255) tACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATcaca > 2:1490813/1‑76 (MQ=255) aCTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACAt < 1:1006258/76‑1 (MQ=255) aCTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACAt < 1:1359458/76‑1 (MQ=255) aCTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACAt < 2:783044/76‑1 (MQ=255) cTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATa < 1:663534/76‑1 (MQ=255) cTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATa < 1:567550/76‑1 (MQ=255) tCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATAc > 2:106799/1‑76 (MQ=255) cAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACACGAAATCTGTTATCACATACa > 2:1092596/1‑76 (MQ=255) ggACTTCTTTACTGAAAATGCCACACATAAACAGAACTNTGCCTCGTTTAACCCGAAATCTGTTATCACATACAAc < 1:1983636/76‑1 (MQ=255) ggACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAAc < 1:806110/76‑1 (MQ=255) cttcttTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGtt < 2:693121/76‑1 (MQ=255) cttcttTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGtt < 2:963210/76‑1 (MQ=255) tttACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAAtt < 1:517188/76‑1 (MQ=255) ttACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTa > 1:862296/1‑76 (MQ=255) tACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTAt > 1:424633/1‑76 (MQ=255) tACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTAt < 1:1161972/76‑1 (MQ=255) tACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTAt > 2:1439799/1‑76 (MQ=255) tGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGc > 1:976968/1‑76 (MQ=255) gAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCa < 1:1072600/76‑1 (MQ=255) gAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCa < 1:867416/76‑1 (MQ=255) gAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCa > 2:1740180/1‑76 (MQ=255) aaaaTGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCaa > 2:1845648/1‑76 (MQ=255) aaaTGCCACGCATAAACAGAACTCTGCCTCGTTTAACCCGAAATCTGTTATCACATACNACGTTAATTATGGCAAg < 1:259854/76‑1 (MQ=255) aaaTGCCACACATAAACAGAACAGTNCATCGTTTAACCCGAAATCTCNTATTACATACAACGTTAATTATGGCAAg < 1:305031/76‑1 (MQ=255) aaTGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGc < 2:273856/76‑1 (MQ=255) aaTGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGc > 2:110565/1‑76 (MQ=255) aaTGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGc < 2:273870/76‑1 (MQ=255) tGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCa > 1:850840/1‑76 (MQ=255) gCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTCATTATGGCAAGCCAt > 1:1688357/1‑76 (MQ=255) cacacaTAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCAttt > 2:1556452/1‑76 (MQ=255) cacaTAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCAttttt < 2:1145673/76‑1 (MQ=255) cacaTAAACAGAACTGTAACTTGTTTAACCCGAAATCTGTTATCCCATCCACCGTTAATTATGGCAAGCCAttttt < 2:984990/76‑1 (MQ=255) caTAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTaa < 1:367918/76‑1 (MQ=255) caTAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTaa < 2:1885346/76‑1 (MQ=255) caTAAACAGAACTGGGCGTGGTGTAACCCGAAATCTGTTATCACATACAACTTTATTTATGGCAAGCCATTTTTaa < 1:103794/76‑1 (MQ=255) aTAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTaaa < 1:755984/76‑1 (MQ=255) aTAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTaaa < 2:366364/76‑1 (MQ=255) tAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAAc > 2:1345751/1‑76 (MQ=255) aaaCAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACa > 2:917508/1‑76 (MQ=255) aaCAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACAt < 2:1583976/76‑1 (MQ=255) aCAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATg < 1:1272135/76‑1 (MQ=255) aCAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTCAATTATGGCAAGCCATTTTTAAACATg < 1:1824099/76‑1 (MQ=255) cAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGt > 1:528938/1‑76 (MQ=255) cAGAACTGTGCCTCGTTTAACCCGAAATCTGTTACAACATAAAAGGTTAATTATGCAAAGCCATTTTTAAA‑ATGtc > 2:634662/1‑76 (MQ=255) cAGAACTGTGCCNCGNTTAACCCGAAATCTGTTANCACATAGAACGTTAATTATGGCAAGCCATTTTTAAACATGt < 1:1674387/76‑1 (MQ=255) gAACTGTGCCTCGTTTAACCCNAANTCTGTTAGCACATACAACGTTNATTATGGNANGCCATTTTTAAACATGtct > 2:303337/1‑76 (MQ=255) gAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGtct < 2:1565423/76‑1 (MQ=255) gAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTGTAAACATGtct < 1:115094/76‑1 (MQ=255) aaCTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGtctc < 1:912065/76‑1 (MQ=255) aCTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGTCTCg < 1:1154080/76‑1 (MQ=255) aCTGTGCCTCGTTTAACCCAAAATCTGTTGTCACATACAAGGTTAATTATGGCACGCCATTTTTAAACATGTCTCg < 2:28557/76‑1 (MQ=255) cTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGTCTCGa > 1:993995/1‑76 (MQ=255) cTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGTCTCGa < 2:1362560/76‑1 (MQ=255) tgtgCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGTCTCGAt > 1:984981/1‑76 (MQ=255) | AGAGAAGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGTCTCGAT > REL606/1886108‑1886255 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |