New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	2041220 =	34 (0.690)	3 (0.060)	3/142	5.7	6.7%	coding (164/1113 nt)	vioA	VioA, involved in dTDP‑N‑acetylviosamine synthesis
	?	REL606	2041465 =	52 (1.120)					coding (1356/1428 nt)	wzx	O antigen translocase (Wzx)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAA  >  REL606/2041391‑2041540                                                                           |                                                                            ccTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATaa                                                                            >  1:268254/1‑76 (MQ=255)   ttATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATg                                                                          <  1:770590/76‑1 (MQ=255)     aTTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGc                                                                        >  1:580520/1‑76 (MQ=255)      tttttttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCa                                                                       <  1:211342/76‑1 (MQ=255)       ttttttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCAt                                                                      <  1:1074315/76‑1 (MQ=255)       ttttttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCAt                                                                      <  1:1390035/76‑1 (MQ=255)       ttttttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCAt                                                                      <  1:1156448/76‑1 (MQ=255)       ttttttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCAt                                                                      <  1:1074339/76‑1 (MQ=255)       ttttttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCAt                                                                      <  1:1074320/76‑1 (MQ=255)       ttttttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGCCAt                                                                      <  1:1156456/76‑1 (MQ=255)          tttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTta                                                                   >  1:578776/1‑76 (MQ=255)           ttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACGTAATTCGAATTAGTGTGATGTATATAATGGCATTtaa                                                                  <  1:921370/76‑1 (MQ=255)             ataAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTtaata                                                                <  1:1385024/76‑1 (MQ=255)                agagAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTGGGGTGATGTATAT‑ATGGCATTTAATAAAAt                                                            <  2:1088780/76‑1 (MQ=255)                agagAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATaaaa                                                             <  1:1099915/76‑1 (MQ=255)                agagAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATaaaa                                                             <  1:384585/76‑1 (MQ=255)                 gagaAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAAt                                                            <  2:1088786/76‑1 (MQ=255)                 gagaAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAAt                                                            <  1:210712/76‑1 (MQ=255)                  agaAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATa                                                           <  1:24980/76‑1 (MQ=255)                  agaAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATa                                                           <  1:24972/76‑1 (MQ=255)                   gaAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATan                                                          <  1:109281/76‑2 (MQ=255)                   gaAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAg                                                          <  1:746633/76‑1 (MQ=255)                   gaAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAg                                                          <  1:746630/76‑1 (MQ=255)                   gaAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAg                                                          <  1:746621/76‑1 (MQ=255)                    aaaTAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGt                                                         <  1:1508716/76‑1 (MQ=255)                    aaaTAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGt                                                         <  1:142600/76‑1 (MQ=255)                    aaaTAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGt                                                         <  1:397318/76‑1 (MQ=255)                    aaaTAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGt                                                         <  1:142592/76‑1 (MQ=255)                     aataatAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTa                                                        <  1:634180/76‑1 (MQ=255)                       taataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTaaa                                                      >  2:862154/1‑76 (MQ=255)                        aataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAat                                                     <  1:408376/76‑1 (MQ=255)                         ataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAata                                                    <  1:1552587/76‑1 (MQ=255)                         ataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAata                                                    <  1:1184306/76‑1 (MQ=255)                         ataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAata                                                    >  2:885271/1‑76 (MQ=255)                            gTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatatta                                                 >  1:1438698/1‑76 (MQ=255)                             tCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattat                                                <  1:1534637/76‑1 (MQ=255)                             tCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattat                                                <  1:1534617/76‑1 (MQ=255)                              cATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattata                                               <  2:88507/76‑1 (MQ=255)                              cATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattata                                               >  2:569076/1‑76 (MQ=255)                              cATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattata                                               >  2:569070/1‑76 (MQ=255)                               aTAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattatat                                              <  1:102820/76‑1 (MQ=255)                                  aaTATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTta                                           >  2:1059693/1‑76 (MQ=255)                                   atatTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaa                                          <  2:555021/76‑1 (MQ=255)                                    tatTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaat                                         >  1:1359596/1‑76 (MQ=255)                                            tGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTc                                 >  1:1141749/1‑76 (MQ=255)                                                 aTAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATAc                            >  1:273971/1‑76 (MQ=255)                                                  tAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACt                           <  2:987726/76‑1 (MQ=255)                                                    aTTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGATTCCATGCTTa                         <  2:1547365/76‑1 (MQ=255)                                                        gAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTc                     >  1:560024/1‑76 (MQ=255)                                                                 tgATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTataat            >  1:265121/1‑76 (MQ=255)                                                                 tgATGTATATAATGGCATTTAATAAAATAGTAAATATTAAATTTAATAAAGGTTCCATACTTATTTCATTTataat            >  1:265099/1‑76 (MQ=255)                                                                     gTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAg        <  1:754798/76‑1 (MQ=255)                                                                           aaTGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGaa  <  1:1192113/76‑1 (MQ=255)                                                                           |                                                                            CCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAA  >  REL606/2041391‑2041540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.