| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893619–3894994 | 3901930 | 6937–8312 | 19 [17] | [0] 81 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3652533 | NA (NA) | 77 (1.240) | 56/146 | 0.1 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652457‑3652533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > REL606/3901931‑3902005 GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:1584362/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 2:1900228/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:716122/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:1788078/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 2:1682979/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:701850/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC > 2:265617/1‑76GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 2:147304/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 2:384750/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 2:1744639/1‑76 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:1444300/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:668715/76‑1 GTCTGACGCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTACAACGTTTTGGGGTCAGTACA < 2:384707/76‑1 CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG > 2:2002296/1‑76 CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG > 2:1539650/1‑76 CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG > 1:978137/1‑76 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT < 2:1733685/76‑1 CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC > 2:74411/1‑76 CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCA > 2:1760047/1‑76 AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAG < 1:1492773/76‑1 ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGG < 1:1608678/76‑1 TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG < 1:787366/76‑1 TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG < 1:859119/76‑1 GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGA < 2:396497/76‑1 GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGA < 1:702487/76‑1 GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGA < 1:1938274/76‑1 AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGAC > 1:2012400/1‑76 AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGAC > 2:1902268/1‑76 AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGAC > 1:1764478/1‑76 AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGAC < 1:1534355/76‑1 AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGAC > 1:1092549/1‑76 ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACC > 1:106242/1‑76 ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACC > 2:1364091/1‑76 TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCA > 1:901710/1‑76 TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCA > 2:913419/1‑76 TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCA < 2:1487098/76‑1 GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCAC > 2:1764918/1‑76 GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCAC < 2:306506/76‑1 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGC > 1:1436081/1‑76 ATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC > 1:1015055/1‑76 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGC > 1:1528178/1‑76 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGC > 1:1528190/1‑76 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGC > 2:1055142/1‑76 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGC > 2:928122/1‑76 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC > 2:425253/1‑76 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC > 2:564694/1‑76 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC > 1:1902275/1‑76 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCA > 2:1635829/1‑76 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGA > 2:1042407/1‑76 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC < 2:981952/76‑1 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC > 1:923534/1‑76 TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > 2:972208/1‑76 GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGG > 1:1033260/1‑76 GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGG > 1:1090920/1‑76 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCT > 1:393817/1‑76 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCT < 1:1971258/76‑1 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTA < 2:1586957/76‑1 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAA > 1:1816928/1‑76 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAT > 2:332291/1‑76 TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATT > 1:1401964/1‑76 TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATT > 2:1846788/1‑76 AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGG > 2:31838/1‑76 CTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCC > 1:444953/1‑76 TGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCC > 2:1115302/1‑76 TGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCC < 1:1580246/76‑1 GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCC > 1:1096221/1‑76 GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCC < 1:1107106/76‑1 TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCA < 2:75625/76‑1 TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCA < 2:688169/76‑1 TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCA < 2:688153/76‑1 CCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCAC > 1:370226/1‑76 CCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCAC < 1:375008/76‑1 ACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAG > 1:844836/1‑76 TTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGAC > 1:337094/1‑76 TTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGAC < 1:1770715/76‑1 TTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCG < 1:425253/76‑1 TGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGG < 1:1434035/76‑1 GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGC < 2:365991/76‑1 GGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCAACAAGACCCGGCt > 1:217398/1‑75 GGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCAT > 1:177960/1‑76 GGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCAT < 1:1902268/76‑1 TCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGG > 1:383883/1‑76 TCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGG > 2:1177944/1‑76 CAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGC > 1:707127/1‑76 AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCG < 2:1195060/76‑1 AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCG < 2:1092549/76‑1 GTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGA > 1:1156503/1‑76 GTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGA < 2:1816928/76‑1 TACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGAC < 2:1776017/76‑1 ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACA < 2:1741590/76‑1 nAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAA > 1:1896748/2‑76 CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAA > 1:1341662/1‑76 CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAA < 1:928122/76‑1 AGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA < 1:1082833/76‑1 GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652457‑3652533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > REL606/3901931‑3902005 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |