New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2038688 = | 16 (0.310) | 5 (0.100) | 3/138 | 6.8 | 25.8% | coding (261/822 nt) | wbbB | putative glycosyltransferase WbbB |
? | REL606 | 2038966 = | 14 (0.290) | coding (729/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
Rejected: Coverage evenness skew score above cutoff. |
CTTTTTGAGTTTTCTGCCTATAAGGAAGGAATAGATTTTTTAGAAGATAGCTCATTATTACCATCAGGAGTACCAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2038765‑2038688 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaattGATTGAAGGTGATAACAAAGAAGCCATACAATGAGTTGAAAGAGCGGGGATAGGTGAAAGAAGTCTAATTCT > REL606/2038966‑2039037 CTTTTTGAGTTTTCTGCCTAT‑AGGAAGGGATAGGTTTTTTAGGAGATAGCTCATTATTACCATCAGGAGTACCAAT > 1:1515957/1‑76 CTTTTTGAGTTTTCTGCCTAT‑AGGAAGGAATAGATTTTTTAGAAGATAGCTCATTATTACCATCAGGAGTACCAAT > 1:1515949/1‑76 CTGCCTATAAGGAAGGAATAGATTTTTTAGAAGATAGCTCATTATTACCATCAGGAGTACCAATTGATTGAAGGTG < 2:491835/76‑1 CTGCCTATAAGGAAGGAATAGATTTTTTAGAAGATAGCTCATTATTACCATCAGGAGTACCAATTGATTGAAGGTG < 2:491841/76‑1 TAAGGAAGGAATAGATTTTTTAGAAGATAGCTCATTATTACCATCAGGAGTACCAATTGATTGAAGGTGATAACAA < 2:1139386/76‑1 TAAGGAAGGAATAGATTTTTTAGAAGATAGCTCATTATTACCATCAGGAGTACCAATTGATTGAAGGTGATAACAA < 2:1139401/76‑1 GAAGGAATAGATTTTTTAGAAGATAGCTCATTATTACCATCAGGAGTACCAATTGATTGAAGGTGATAACAAAGAA < 2:1050326/76‑1 gATTGATTGAAGGTGATAACAAAGAAGCCATACAATGAGTTGAAAGAGCGGGGATAGGTGAAAGAAGTCTAATTCT < 1:1577939/75‑1 CTTTTTGAGTTTTCTGCCTATAAGGAAGGAATAGATTTTTTAGAAGATAGCTCATTATTACCATCAGGAGTACCAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2038765‑2038688 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaattGATTGAAGGTGATAACAAAGAAGCCATACAATGAGTTGAAAGAGCGGGGATAGGTGAAAGAAGTCTAATTCT > REL606/2038966‑2039037 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |