| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3737856 = | 44 (0.840) | 3 (0.060) | 3/136 | 6.7 | 6.6% | intergenic (‑30/+16) | waaL/waaV | Lipid A‑core, surface polymer ligase/putative beta1,3‑glucosyltransferase |
| ? | REL606 | 3738065 = | 45 (0.950) | coding (791/984 nt) | waaV | putative beta1,3‑glucosyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAAAAAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3737933‑3737856‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaataaCGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAACTG > REL606/3738065‑3738138 CAAAAAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAAT > 1:190403/1‑76CAAAAAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAAT < 2:257624/76‑1 AAAAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAA > 2:541639/1‑76 ATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACGAG < 2:1224122/76‑1 GAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACGAGTTTTATGATAAGC < 2:86628/76‑1 GGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACGAGTTTTATGATAAGCTC < 2:1360361/76‑1 AATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAA < 2:1431083/76‑1 ATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAAC > 1:1473226/1‑76 ATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAAC > 2:1451162/1‑76 ATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAAC > 2:1451183/1‑76 ATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAAC < 2:478026/76‑1 TAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAACT < 1:436913/76‑1 TAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAACT > 2:1276784/1‑76 AACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAACTG > 1:746609/1‑76 CAAAAAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3737933‑3737856‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaataaCGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAACTG > REL606/3738065‑3738138 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |