| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 2,409,844 | +C | coding (102/933 nt) | yfdC → | predicted inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 2,409,840 | 1 | . | C | 100.0% | 56.8 / NA | 17 | L33P (CTC→CCC) | yfdC | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (8/9); total (8/9) | |||||||||||
AACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGA‑CT‑CCCCTCCCGGGCGATGGCAATTCATGAGCATATCCGCCAGGATGGTGAAAAAGAGCTGGAACGCGACGCA > REL606/2409765‑2409910 | aaCACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGA‑ct > 2:345033/1‑76 (MQ=255) cgacgaAATTGAAGTTGAGCGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGA‑ct‑ccccctc > 1:184539/1‑73 (MQ=255) cgacgaAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGA‑ct‑ccccctc > 1:184544/1‑73 (MQ=255) cgaAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGACCC‑CCCCTCCCg < 1:1152615/76‑1 (MQ=255) cgaAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGA‑CTCCCCCTCCCg < 1:1152619/76‑1 (MQ=255) gAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGA‑CTCCCCCTCCCGGGCGATg > 2:518771/1‑76 (MQ=255) gAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGA‑CTCCCCCTCCCGGGCGATg < 2:1197872/76‑1 (MQ=255) aGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGA‑CTCCCCCTCCCGGGCGATGGc > 2:989455/1‑76 (MQ=255) cGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGA‑CTCCCCCTCCCGGGCGATGGCAATTCATGa < 1:486017/76‑1 (MQ=255) aaaaaGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGA‑CTCCCCCTCCCGGGCGATGGCAATTCATGAGCata > 1:1218839/1‑76 (MQ=255) aaGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGA‑CTCCCCCTCCCGGGCGATGGCAATTCATGAGCATATcc < 1:1119030/76‑1 (MQ=255) ggCAAAAAAATAGAAATAGATGAAGACCGA‑CTCCCCCTCCCGGGCGATGGCAATTCATGAGCATATCCGCCAGGAt < 2:778886/76‑1 (MQ=255) aaaaaaTAGAAATAGATGAAGACCGA‑CTCCCCCTCCCGGGCGATGGCAATTCATGAGCATATCCGCCAGGATGGTg > 2:1205065/1‑76 (MQ=255) aaatagaaatagATGAAGACCGA‑CTCCCCCTCCCGGGCGATGGCAATTCATGAGCATATCCGCCAGGATGGTGaaa < 1:364219/76‑1 (MQ=255) aatagaaatagaTGAAGACCGA‑CTCCCCCTCCCGGGCGATGGCAATTCATGAGCATATCCGCCAGGATGGTGaaaa < 1:745360/76‑1 (MQ=255) tagaaatagaTGAAGACCGA‑CTCCCCCTCCCGGGCGATGGCAATTCATGAGCATATCCGCCAGGATGGTGAAAAag < 2:1152983/76‑1 (MQ=255) gaTGAAGACCAA‑CTCCCCCTCCCGGGCGATGGCAATTCATGAGCATATCCGCCAGGATGGTGAAAAAGAGCTGGaa < 2:926703/76‑1 (MQ=255) aGACCGA‑CTCCCCCTCCCGGGCGATGGCAATTCATGAGCATATCCGCCAGGATGGTGAAAAAGAGCTGGAACGCGa > 1:991118/1‑76 (MQ=255) gACCGA‑CTCCCCCTCCCGGGCGATGGCAATTCATGAGCATATCCGCCAGGATGGTGAAAAAGAGCTGGAACGCGAc > 1:181270/1‑76 (MQ=255) aCCGA‑CTCCCCCTCCCGGGCGATGGCAATTCATGAGCATATCCGCCAGGATGGTGAAAAAGAGCTGGAACGCGACg < 1:1211926/76‑1 (MQ=255) ccGA‑CTCCCCCTCCCGGGCGATGGCAATTCATGAGCATATCCGCCAGGATGGTGAAAAAGAGCTGGAACGCGACGc > 1:15582/1‑76 (MQ=255) cGA‑CTCCCCCTCCCGGGCGATGGCAATTCATGAGCATATCCGCCAGGATGGTGAAAAAGAGCTGGAACGCGACGCa > 2:1028483/1‑76 (MQ=255) | AACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGA‑CT‑CCCCTCCCGGGCGATGGCAATTCATGAGCATATCCGCCAGGATGGTGAAAAAGAGCTGGAACGCGACGCA > REL606/2409765‑2409910 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |