| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 1,303,072 | Δ1,756 bp | [oppD]–[cls] | [oppD], oppF, yciU, [cls] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 1303072 | 1304827 | 1756 | 41 [0] | [0] 39 | [oppD]–[cls] | [oppD],oppF,yciU,[cls] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1303071 | 0 (0.000) | 39 (1.000) | 31/150 | 0.2 | 100% | coding (724/1014 nt) | oppD | oligopeptide transporter ATP‑binding component |
| ? | REL606 | 1304828 = | 0 (0.000) | coding (1412/1461 nt) | cls | cardiolipin synthetase | |||||
ATTTAATACCGCCATCATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1302998‑1303071‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTCCTGAACGGCGGC > REL606/1304828‑1304901 ATTTAATACCGCCATCATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACA > 2:198674/1‑76 AATACCGCCATCATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAAT > 1:456107/1‑76 AATACCGCCATCATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAAT > 2:591968/1‑76 AATACCGCCATCATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAAT > 2:80081/1‑76 TACCGCCATCATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGG > 2:345487/1‑76 TACCGCCATCATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGG < 2:857968/76‑1 TACCGCCATCATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGG < 1:692345/76‑1 TACCGCCATCATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGG < 1:692353/76‑1 ACCGCCATCATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGA > 2:653511/1‑76 CCGCCATCATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGAC < 1:846591/76‑1 CGCCATCATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACG < 1:234654/76‑1 CCATCATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTT < 2:840907/76‑1 CATCATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTT > 1:905832/1‑76 ATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGC > 2:845861/1‑76 ATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGC < 1:852433/76‑1 ATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGC > 2:206608/1‑76 TATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGCCA > 2:423561/1‑76 GATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGCCATAA < 1:1011393/76‑1 GATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGCCATAA > 2:1042176/1‑76 CACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGCCATAAACG < 2:257480/76‑1 CCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGCCATAAACGGG < 1:874504/76‑1 CCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGCCATAAACGGGC < 1:516439/76‑1 CACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGCCATAAACGGGCA > 1:236475/1‑76 ATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGCCATAAACGGGCATCGA > 1:1119681/1‑76 tgTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGCCATAAACGGGCATCGAG < 1:1043158/74‑1 TCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGCCATAAACGGGCATCGAG < 1:1181268/76‑1 CTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGCCATAAACGGGCATCGAGC < 2:514025/76‑1 GGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGA < 1:1170393/76‑1 GGTGGCGGGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGA < 1:1170389/76‑1 GTGGCGGGGATCTGCGACAAAGTGCTGGTAACTTATTGGACTTTTTAGCCATAAACGGGCATCGAGCAGACGTGAA < 2:419517/76‑1 GGGATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAA < 1:77313/76‑1 ATCTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATA > 2:310718/1‑76 CTGCGACAAAGTGCTGGTAACATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATA < 1:425281/76‑1 ACAAAGTGCTGGTAACATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGT < 2:147361/76‑1 AAAGTGCTGGTAACATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTCC > 2:713850/1‑76 AAAGTGCTGGTAACATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTCC > 2:713858/1‑76 GTGCTGGTAACATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTCCTGA < 1:956623/76‑1 TGGTAACATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTCCTGAACGG > 1:992979/1‑76 AACATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTCCTGAACGGCGGC < 2:682523/76‑1 ATTTAATACCGCCATCATTATGATCACCCACGATCTTGGCGTGGTGGCGGGGATCTGCGACAAAGTGCTGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1302998‑1303071‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTCCTGAACGGCGGC > REL606/1304828‑1304901 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |