New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2039235 =26 (0.540)6 (0.130) 6/144 4.6 16.4% coding (460/747 nt) wbbA putative glycosyltransferase WbbA
?REL606 2039555 = 36 (0.790)coding (140/747 nt) wbbA putative glycosyltransferase WbbA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCGATATTTTCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTAAACCACT  >  REL606/2039480‑2039630
                                                                           |                                                                           
tCGATATTTTCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATg                                                                             <  1:1127290/76‑1 (MQ=255)
   atatTTTCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTa                                                                          >  1:1269872/1‑76 (MQ=255)
        ttCAAAGTTTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTgg                                                                     <  1:768749/76‑1 (MQ=255)
         tCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTggn                                                                    <  1:1011726/76‑2 (MQ=255)
         tCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGt                                                                    <  1:875504/76‑1 (MQ=255)
         tCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGt                                                                    <  1:578807/76‑1 (MQ=255)
            aaGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCtt                                                                 <  1:1081214/76‑1 (MQ=255)
                gtTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTtata                                                             <  1:1192106/76‑1 (MQ=255)
                gtTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTtata                                                             <  1:1192119/76‑1 (MQ=255)
                gtTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTtata                                                             >  1:359267/1‑76 (MQ=255)
                 ttGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTatat                                                            <  1:873417/76‑1 (MQ=255)
                   gATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATAttt                                                          <  1:373338/76‑1 (MQ=255)
                   gATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATAttt                                                          <  1:1523052/76‑1 (MQ=255)
                    atatAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTa                                                         >  2:548784/1‑76 (MQ=255)
                          cGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGActct                                                   <  1:572869/76‑1 (MQ=255)
                          cGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCt                                                   <  1:572895/76‑1 (MQ=255)
                           ggATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCtt                                                  <  1:679926/76‑1 (MQ=255)
                           ggATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCtt                                                  <  1:679934/76‑1 (MQ=255)
                              tCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTa                                               <  1:343242/76‑1 (MQ=255)
                                tAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTAtt                                             <  1:708601/76‑1 (MQ=255)
                                  aGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGt                                           <  1:830279/76‑1 (MQ=255)
                                      aGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTAttt                                       <  1:927905/76‑1 (MQ=255)
                                         aaCGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTtata                                    <  1:539238/76‑1 (MQ=255)
                                             tttAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGAt                                <  1:525484/76‑1 (MQ=255)
                                               tAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGAttt                              <  1:1089545/76‑1 (MQ=255)
                                               tAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGAttt                              <  1:1089558/76‑1 (MQ=255)
                                                aaTGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTta                             <  1:1476057/76‑1 (MQ=255)
                                                 aTGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTtat                            <  2:1102673/76‑1 (MQ=255)
                                                    aTCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATaaa                         <  1:280419/76‑1 (MQ=255)
                                                    aTCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCGTTTATTGTATTTATAAGATTTATaaa                         <  1:280416/76‑1 (MQ=255)
                                                     tCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATaaaa                        >  1:706458/1‑76 (MQ=255)
                                                       cATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACa                      <  1:266597/76‑1 (MQ=255)
                                                                tAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATg             <  1:581630/76‑1 (MQ=255)
                                                                     gTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTaa        <  1:107862/76‑1 (MQ=255)
                                                                      tAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTaaa       >  1:1434846/1‑76 (MQ=255)
                                                                       aaaTGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTAAAc      >  1:88203/1‑76 (MQ=255)
                                                                           gCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTAAACCACt  >  1:505887/1‑76 (MQ=255)
                                                                           |                                                                           
TCGATATTTTCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTAAACCACT  >  REL606/2039480‑2039630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.