New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2039235 = | 26 (0.540) | 6 (0.130) | 6/144 | 4.6 | 16.4% | coding (460/747 nt) | wbbA | putative glycosyltransferase WbbA |
? | REL606 | 2039555 = | 36 (0.790) | coding (140/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
TCGATATTTTCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTAAACCACT > REL606/2039480‑2039630 | tCGATATTTTCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATg < 1:1127290/76‑1 (MQ=255) atatTTTCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTa > 1:1269872/1‑76 (MQ=255) ttCAAAGTTTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTgg < 1:768749/76‑1 (MQ=255) tCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTggn < 1:1011726/76‑2 (MQ=255) tCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGt < 1:875504/76‑1 (MQ=255) tCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGt < 1:578807/76‑1 (MQ=255) aaGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCtt < 1:1081214/76‑1 (MQ=255) gtTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTtata < 1:1192106/76‑1 (MQ=255) gtTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTtata < 1:1192119/76‑1 (MQ=255) gtTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTtata > 1:359267/1‑76 (MQ=255) ttGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTatat < 1:873417/76‑1 (MQ=255) gATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATAttt < 1:373338/76‑1 (MQ=255) gATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATAttt < 1:1523052/76‑1 (MQ=255) atatAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTa > 2:548784/1‑76 (MQ=255) cGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGActct < 1:572869/76‑1 (MQ=255) cGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCt < 1:572895/76‑1 (MQ=255) ggATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCtt < 1:679926/76‑1 (MQ=255) ggATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCtt < 1:679934/76‑1 (MQ=255) tCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTa < 1:343242/76‑1 (MQ=255) tAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTAtt < 1:708601/76‑1 (MQ=255) aGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGt < 1:830279/76‑1 (MQ=255) aGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTAttt < 1:927905/76‑1 (MQ=255) aaCGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTtata < 1:539238/76‑1 (MQ=255) tttAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGAt < 1:525484/76‑1 (MQ=255) tAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGAttt < 1:1089545/76‑1 (MQ=255) tAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGAttt < 1:1089558/76‑1 (MQ=255) aaTGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTta < 1:1476057/76‑1 (MQ=255) aTGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTtat < 2:1102673/76‑1 (MQ=255) aTCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATaaa < 1:280419/76‑1 (MQ=255) aTCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCGTTTATTGTATTTATAAGATTTATaaa < 1:280416/76‑1 (MQ=255) tCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATaaaa > 1:706458/1‑76 (MQ=255) cATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACa < 1:266597/76‑1 (MQ=255) tAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATg < 1:581630/76‑1 (MQ=255) gTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTaa < 1:107862/76‑1 (MQ=255) tAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTaaa > 1:1434846/1‑76 (MQ=255) aaaTGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTAAAc > 1:88203/1‑76 (MQ=255) gCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTAAACCACt > 1:505887/1‑76 (MQ=255) | TCGATATTTTCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTAAACCACT > REL606/2039480‑2039630 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |