| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 43 (0.830) | 36/144 | 0.4 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 56 (1.080) | 46/144 | 0.1 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
AAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC > REL606/2772782‑2772925 | aatttttGTTTCATCGTGATGCCCGTTTTACCCCCGCGGGCGGGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCa < 1:1145281/73‑1 (MQ=255) aaTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCAt < 1:111500/76‑1 (MQ=255) tttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGGGGGGAAAAACCCCATAAg > 2:1609249/1‑76 (MQ=255) ttGATTCATCGTGATGACCGGTTTACCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAgc < 1:336138/76‑1 (MQ=255) tttCGTCGTGATGCCCGTTTTCCCCCCGGGGGCGGGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCt < 1:681408/75‑1 (MQ=255) ttCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGGGGGGGAAAAACCCCA‑AAGCGCTa > 2:1428863/1‑76 (MQ=25) ttCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTa < 2:1327004/76‑1 (MQ=255) cgtCGTGAGGACCGTTTTACCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAc < 1:467869/74‑1 (MQ=38) cATCGTGATGACCGGTTTCTCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAc < 1:1215694/76‑1 (MQ=255) cATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAc < 2:153597/76‑1 (MQ=255) gTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTaa < 1:1543444/76‑1 (MQ=255) gTGATGACCGGTTTATCCCCGCCGGCGCGGGGAACA‑CCCTGAAC‑GGGGGGGAAAAACCCCATAAGCGCTAACTTaa > 2:454073/1‑76 (MQ=38) gatgaCCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAgg < 1:1255794/76‑1 (MQ=255) gatgaCCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAgg < 2:530939/76‑1 (MQ=255) gaCCGGTTTATCCCCGCTGGGGCGGGGGACACCCCCCACC‑GGGGGGGCGAAACCCC‑CAAGCGCTAACTTAAggggt > 2:253263/1‑74 (MQ=9) gaCCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGtt < 1:133332/76‑1 (MQ=255) aCCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAAA‑GGGGGGGAAAAACCCCCAAAGCGCCAACTTAAGGGGtg > 2:210928/1‑76 (MQ=21) ccGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGGGGGGAAAAACCCCACAAGCGCTAACTTAAAGGgtgt > 1:1458450/1‑76 (MQ=25) gTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGGGGGGAAAAACCCCATAAGCGCTAACTTAAGGGGTGTGGt > 2:1303154/1‑76 (MQ=255) tttATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa > 2:1504091/1‑76 (MQ=255) ttATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 2:1198393/76‑1 (MQ=255) ttATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt > 2:312592/1‑76 (MQ=255) ttATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt > 2:790080/1‑76 (MQ=255) ttATCCCCGCCGGCGGGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAAACCCCTAAGCGCTAAATTAAGGATTGTGGGAt > 2:1587736/1‑76 (MQ=255) tATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAGAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 2:1595155/76‑1 (MQ=255) tATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:1525083/76‑1 (MQ=255) tATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 2:458307/76‑1 (MQ=255) cccccGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAc < 1:735035/75‑1 (MQ=255) ccccGCGGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACg < 2:1092273/76‑1 (MQ=255) ccGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGcc > 2:1248681/1‑76 (MQ=255) cGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt > 2:124633/1‑76 (MQ=255) cTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa > 2:1481275/1‑76 (MQ=255) gcgGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGa < 1:496664/76‑1 (MQ=255) cgGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt > 1:1212023/1‑76 (MQ=255) cgGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt > 1:626454/1‑76 (MQ=255) ggggAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTACGGGATGTGGGATTCAGCCAGATATGAtt > 2:1138658/1‑76 (MQ=21) gggAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 1:71382/76‑1 (MQ=255) gggAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 2:594518/76‑1 (MQ=255) gggAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 2:638367/76‑1 (MQ=255) ggAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTCTTACGCCTGATATGCTTTa > 1:196430/1‑76 (MQ=255) ggAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa < 1:321002/76‑1 (MQ=255) aaCA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAAc < 2:1656579/76‑1 (MQ=255) aca‑cCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACg > 2:1458711/1‑76 (MQ=255) ca‑cCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGt > 2:1244951/1‑76 (MQ=255) aaC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg < 1:578902/76‑1 (MQ=255) aaC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg < 1:484427/76‑1 (MQ=255) aC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 2:1458450/76‑1 (MQ=255) c‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa < 1:417475/76‑1 (MQ=255) c‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa > 1:1379334/1‑76 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt < 2:160287/76‑1 (MQ=255) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa < 1:1149002/76‑1 (MQ=40) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa < 1:1014333/76‑1 (MQ=40) gAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct < 1:1212645/76‑1 (MQ=34) aaaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCNATGAATTACtctc < 1:1182043/76‑1 (MQ=17) aaaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACtctc < 1:460323/76‑1 (MQ=32) aaaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACtctc < 1:709074/76‑1 (MQ=32) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa < 1:1719078/76‑1 (MQ=31) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa < 1:707538/76‑1 (MQ=31) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGA‑TTAACGTGCCGATGAATTACTCTCAc < 1:323201/76‑1 (MQ=9) | AAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC > REL606/2772782‑2772925 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |