| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2040188 = | 50 (0.980) | 5 (0.110) | 5/138 | 5.1 | 8.8% | intergenic (‑60/+83) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040424 = | 58 (1.240) | coding (960/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGGCCTATTTAGATGAAATACAGTTAAAAGAAATGGGCTTCAAAAGCGTTGGAGAAAATGTAAAAATATCAGATAAGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2040268‑2040188‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcatATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACG > REL606/2040424‑2040498 TGGCCTATTTAGATGAAATACAGTTAAAAGAAATGGGCTTCAAAAGCGTTGGAGAAAATGTAAAAATATCAGATAA < 1:964333/76‑1TGGCCTATTTAGATGAAATACAGTTAAAAGAAATGGGCTTCAAAAGCGTTGGAGAAAATGTAAAAATATCAGATAA < 1:144245/76‑1TGGCCTATTTAGATGAAATACAGTTAAAAGAAATGGGCTTCAAAAGCGTTGGAGAAAATGTAAAAATATCAGATAA > 1:465932/1‑76 GCCTATTTAGATGAAATACAGTTAAAAGAAATGGGCTTCAAAAGCGTTGGAGAAAATGTAAAAATATCAGATAAGG < 1:1073219/76‑1 GCCTATTTAGATGAAATACAGTTAAAAGAAATGGGCTTCAAAAGCGTTGGAGAAAATGTAAAAATATCAGATAAGG < 1:580366/76‑1 CCTATTTAGATGAAATACAGTTAAAAGAAATGGGCTTCAAAAGCGTTGGAGAAAATGTAAAAATATCAGATAAGGC > 1:441197/1‑76 CCTATTTAGATGAAATACAGTTAAAAGAAATGGGCTTCAAAAGCGTTGGAGAAAATGTAAAAATATCAGATAAGGC > 1:441215/1‑76 CTATTTAGATGAAATACAGTTAAAAGAAATGGGCTTCAAAAGCGTTGGAGAAAATGTAAAAATATCAGATAAGGCA > 1:100475/1‑76 TATTTAGATGAAATACAGTTAAAAGAAATGGGCTTCAAAAGCGTTGGAGAAAATGTAAAAATATCAGATAAGGCAT < 1:411091/76‑1 TATTTAGATGAAATACAGTTAAAAGAAATGGGCTTCAAAAGCGTTGGAGAAAATGTAAAAATATCAGATAAGGCAT < 2:1524328/76‑1 TAGATGAAATACAGTTAAAAGAAATGGGCTTCAAAAGCGTTGGAGAAAATGTAAAAATATCAGATAAGGCATATTA < 2:828241/76‑1 GATGAAATACAGTTAAAAGAAATGGGCTTCAAAAGCGTTGGAGAAAATGTAAAAATATCAGATAAGGCATATTACT < 2:148969/76‑1 TGAAATACAGTTAAAAGAAATGGGCTTCAAAAGCGTTGGAGAAAATGTAAAAATATCAGATAAGGCATATTACTGA < 2:48244/76‑1 AGTTAAAAGAAATGGGCTTCAAAAGCGTTGGAGAAAATGTAAAAATATCAGATAAGGCATATTACTGATTAATGGA < 2:1233040/76‑1 TAAAAGAAATGGGCTTCAAAAGCGTTGGAGAAAATGTAAAAATATCAGATAAGGCATATTACTGATTAATGGATAA < 2:1220973/76‑1 AGGCATATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGA > 2:239300/1‑76 TATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACG > 1:197574/1‑76 TGGCCTATTTAGATGAAATACAGTTAAAAGAAATGGGCTTCAAAAGCGTTGGAGAAAATGTAAAAATATCAGATAAGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2040268‑2040188‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcatATTACTGATTAATGGATAAAAATACTTTCGAGATAGGATATTATTTTTCTTAAGTAATTCATATGCCTGATCACG > REL606/2040424‑2040498 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |