New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 2679623	77 (1.520)	6 (0.130)	5/140	5.2	8.2%	coding (695/1557 nt)	ECB_02510	Recombinase
	?	REL606	= 2680101	62 (1.310)					coding (1173/1557 nt)	ECB_02510	Recombinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACCAAAAAATGAAATAAAAATTGTAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCAAAAATACATCAAAT  >  REL606/2679549‑2679698                                                                           |                                                                            aCCAAAAAATGAAATAAAAATTGTAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCattatt                                                                            <  1:1168292/76‑1 (MQ=255)     aaaaaTGAAATAAAAATTGTAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTg                                                                        <  1:190493/76‑1 (MQ=255)     aaaaaTGAAATAAAAATTGTAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTg                                                                        <  1:170152/76‑1 (MQ=255)          tGAAATAAAAATTGTAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTgagaga                                                                   >  2:367756/1‑76 (MQ=255)            aaaTAAAAATTGTAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGAtt                                                                 <  1:247412/76‑1 (MQ=255)            aaaTAAAAATTGTAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGAtt                                                                 <  2:308586/76‑1 (MQ=255)              aTAAAAATTGTAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTaa                                                               >  2:146483/1‑76 (MQ=255)               tAAAAATTGTAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTaaa                                                              <  2:1440308/76‑1 (MQ=255)                  aaaTTGTAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGTTGAGAGATTAAATga                                                           >  1:1052272/1‑76 (MQ=255)                  aaaTTGTAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATga                                                           >  1:1052283/1‑76 (MQ=255)                   aaTGGTAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATgaa                                                          <  1:518298/76‑1 (MQ=255)                      tGTAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATgaacag                                                       <  2:178155/76‑1 (MQ=255)                      tGTAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATgaacag                                                       <  1:201730/76‑1 (MQ=255)                        tAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATgaacagaa                                                     >  1:1162219/1‑76 (MQ=255)                        tAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATgaacagaa                                                     >  1:381575/1‑76 (MQ=255)                        tAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATgaacagaa                                                     >  2:1554208/1‑76 (MQ=255)                         aaaTAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATgaacagaac                                                    >  2:67387/1‑76 (MQ=255)                          aaTAGCATAGCTGATCTCTTTATAGATAATAACGTCCCAGAATTCAGTCTTGCTGAGCGATTAAATgaacagaaca                                                   >  2:815523/1‑76 (MQ=255)                          aaTAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATgaacagaaca                                                   >  2:815507/1‑76 (MQ=255)                           aTAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACAt                                                  <  2:730450/76‑1 (MQ=255)                            tAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATa                                                 >  2:605678/1‑76 (MQ=255)                             aGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGGGAGATTAAATGAACAGAACATAc                                                >  1:868933/1‑76 (MQ=255)                             aGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATAc                                                >  1:1618310/1‑76 (MQ=255)                             aGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATAc                                                <  2:1540919/76‑1 (MQ=255)                             aGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATAc                                                <  1:487527/76‑1 (MQ=255)                             aGAATATATGAGCGCTTTAGAGATAATAACGGCCCAGAATTCATTAGTGCTGAGAGATTAAATGAACAGAACATAc                                                <  1:487516/76‑1 (MQ=255)                               aaTATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCt                                              <  1:265118/76‑1 (MQ=255)                               aaTATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCt                                              >  1:1280694/1‑76 (MQ=255)                               aaTATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCt                                              <  1:1029171/76‑1 (MQ=255)                                atatatGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTg                                             >  2:137282/1‑76 (MQ=255)                                  atatGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGACCAGAACATAGCTGCa                                           >  2:1622087/1‑76 (MQ=255)                                   tatGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAg                                          <  2:1035323/76‑1 (MQ=255)                                       aTCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGaaac                                      >  2:758922/1‑75 (MQ=255)                                       aTCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGaaaa                                      >  2:626924/1‑76 (MQ=255)                                         ctctTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATg                                    <  2:1523531/76‑1 (MQ=255)                                         ctctTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATg                                    >  2:681264/1‑76 (MQ=255)                                           ctTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGt                                  <  1:108335/76‑1 (MQ=255)                                           ctTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGt                                  >  2:393785/1‑76 (MQ=255)                                           ctTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGt                                  >  1:769642/1‑76 (MQ=255)                                           ctTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGt                                  >  1:1625028/1‑76 (MQ=255)                                             ttATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTAc                                >  1:749138/1‑76 (MQ=255)                                             ttATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTAc                                <  1:1191425/76‑1 (MQ=255)                                               ataGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACAt                              >  2:378069/1‑76 (MQ=255)                                               ataGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAAAAGAAAATACCTGCAGAAAAAGGGACAt                              >  1:590686/1‑76 (MQ=255)                                                 aGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTa                            <  1:1574782/76‑1 (MQ=255)                                                 aGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTa                            <  2:1370469/76‑1 (MQ=255)                                                   ataataACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATg                          >  1:776446/1‑76 (MQ=255)                                                    taataaCGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATgg                         <  2:1211589/76‑1 (MQ=255)                                                      ataaCGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGAc                       >  1:946132/1‑76 (MQ=255)                                                        aaCGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACTGAACATACCTGCAGAAAATGGTACATTATGGACTc                     <  2:1469356/76‑1 (MQ=255)                                                        aaCGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTc                     >  1:846360/1‑76 (MQ=255)                                                        aaCGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTc                     >  1:309713/1‑76 (MQ=255)                                                        aaCGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTc                     >  2:1197312/1‑76 (MQ=255)                                                        aaCGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTc                     >  1:846365/1‑76 (MQ=255)                                                        aaCGGCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTc                     >  1:309729/1‑76 (MQ=255)                                                          cGTCCCAGAATTCGTTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGt                   >  1:1078490/1‑76 (MQ=255)                                                            tCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGc                 >  2:779782/1‑76 (MQ=255)                                                             cccAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCTTGCa                >  1:1586197/1‑76 (MQ=255)                                                             cccAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCa                >  1:77350/1‑76 (MQ=255)                                                             cccAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCa                >  1:1586218/1‑76 (MQ=255)                                                             cccAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCa                <  1:1402876/76‑1 (MQ=255)                                                              ccAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCaa               >  1:33206/1‑76 (MQ=255)                                                              ccAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCaa               >  2:1080578/1‑76 (MQ=255)                                                              ccAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCaa               <  2:525406/76‑1 (MQ=255)                                                                   aTTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCAAAAATa          <  1:725802/76‑1 (MQ=255)                                                                   aTTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCAAAAATa          >  1:70211/1‑76 (MQ=255)                                                                    ttCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCAAAAATAc         >  1:1048440/1‑76 (MQ=255)                                                                    ttCATTAGTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCAAAAATAc         >  1:1048443/1‑76 (MQ=255)                                                                     tCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCAAAAATACa        >  1:325119/1‑76 (MQ=255)                                                                     tCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCAAAAATACa        <  1:1183642/76‑1 (MQ=255)                                                                      cATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCAAAAATACAt       >  1:902180/1‑76 (MQ=255)                                                                      cATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCAAAAATACAt       <  2:951654/76‑1 (MQ=255)                                                                       attattGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCAAAAATACATc      >  2:193782/1‑76 (MQ=255)                                                                        ttattGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCAAAAATACATCa     <  1:64995/76‑1 (MQ=255)                                                                        ttattGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCAAAAATACATCa     <  1:64992/76‑1 (MQ=255)                                                                        ttattGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCAAAAATACATCa     >  1:1113282/1‑76 (MQ=255)                                                                           ttGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCAAAAATACATCAAAt  <  1:1556503/76‑1 (MQ=255)                                                                           |                                                                            ACCAAAAAATGAAATAAAAATTGTAAATAGAATATATGATCTCTTTATAGATAATAACGTCCCAGAATTCATTATTGCTGAGAGATTAAATGAACAGAACATACCTGCAGAAAATGGTACATTATGGACTCGTGCAAAAATACATCAAAT  >  REL606/2679549‑2679698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.