| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041421 = | 70 (1.380) | 4 (0.090) | 4/132 | 5.4 | 6.4% | coding (1400/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | 2041804 = | 56 (1.260) | coding (1017/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AATGTCTTTTTTAGTATTTCCAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCT > REL606/2041730‑2041879 | naTGTCTTTTTTAGTATTTCCAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTg > 1:104245/2‑76 (MQ=255)aaTGTCTTTTTTAGTATTTCCAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTg < 1:1371802/76‑1 (MQ=255) aTGTCTTTTTTAGTATTTCCAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGc > 2:152207/1‑76 (MQ=255) aTGTCTTTTTTAGTATTTCCAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGc < 1:1290292/76‑1 (MQ=255) tGTCTTTTTTAGTATTTCCAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCa > 1:1087050/1‑76 (MQ=255) gTCTTTTTTAGTATTTCCAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCAt < 2:441406/76‑1 (MQ=255) cTTTTTTAGTATTTCCAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGt < 1:941279/76‑1 (MQ=255) tttttAGTATTTCCAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGtat < 1:845310/76‑1 (MQ=255) tttttAGTATTTCCAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGtat > 2:383776/1‑76 (MQ=255) ttAGTATTTCCAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAgg > 2:1151691/1‑76 (MQ=255) gTATTTCCAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGAtn < 1:553009/76‑2 (MQ=255) gTATTTCCAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATa > 2:605617/1‑76 (MQ=255) tATTTCCAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATaa > 1:1463555/1‑76 (MQ=255) aTTTCCAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATaaa < 1:78161/76‑1 (MQ=255) tttCCAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAAt < 1:1378551/76‑1 (MQ=255) ttgccAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAAt < 1:1378530/73‑1 (MQ=255) ccAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCAt < 1:1349070/76‑1 (MQ=255) ccAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGNATAGGATAAATCAt < 1:891348/76‑1 (MQ=255) cAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATa < 1:1399347/76‑1 (MQ=255) cAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATa > 1:19589/1‑76 (MQ=255) cAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATa < 2:147585/76‑1 (MQ=255) aaaCGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATaa < 1:1051654/76‑1 (MQ=255) aaCGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATCTTAATATTTATTGCATGTATAGGATAAATCATaaa < 2:1488495/76‑1 (MQ=255) aaCGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAGTCATaaa < 1:1130964/76‑1 (MQ=255) aaaaGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATAc < 2:281934/76‑1 (MQ=255) aaaGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACa > 1:104487/1‑76 (MQ=255) aaaGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACa < 1:969436/76‑1 (MQ=255) aaGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACaa < 1:1328930/76‑1 (MQ=255) aGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACaaa < 1:330639/76‑1 (MQ=255) aTCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGt < 1:663096/76‑1 (MQ=255) aTCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGt > 1:490502/1‑76 (MQ=255) tCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTa < 1:1340747/76‑1 (MQ=255) tCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTa > 2:61782/1‑76 (MQ=255) tCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTa < 1:513595/76‑1 (MQ=255) cACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAg < 1:1461023/76‑1 (MQ=255) cACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAg > 2:1042986/1‑76 (MQ=255) cTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGaa > 1:69976/1‑76 (MQ=255) ttCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCTATACAAAGTAGaaa < 1:873373/76‑1 (MQ=255) tCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAAc < 1:670642/76‑1 (MQ=255) cccATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGa < 1:711445/76‑1 (MQ=255) cccATGAACCTGTAGGATATTAAAATTTATTGCATGTATAGGATAAACCAAAAAAGCAAAACAAACAACAAACAGa > 1:107797/1‑76 (MQ=255) ccATGAACCTGTAGTATATTAATATTTATTGCATGTATAGTCTAAATCATAAATGCCATACACAGTATAAACAGac > 2:84540/1‑75 (MQ=255) ccACGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGaa > 1:80672/1‑76 (MQ=255) cATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAat > 1:250536/1‑76 (MQ=255) tGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAatat < 2:91634/76‑1 (MQ=255) tGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAatat > 2:469063/1‑76 (MQ=255) tGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAatat < 1:435715/76‑1 (MQ=255) aaCCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCa > 1:1373870/1‑76 (MQ=255) aaCCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCa > 1:1373872/1‑76 (MQ=255) aCCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAg < 2:1118645/76‑1 (MQ=255) tGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATg > 1:1268546/1‑76 (MQ=255) aGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTaa > 1:734226/1‑76 (MQ=255) ggATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTaaa < 2:1564680/76‑1 (MQ=255) ggATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTaaa < 2:289838/76‑1 (MQ=255) gATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAAt < 1:9015/76‑1 (MQ=255) ttAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTcc < 2:926656/76‑1 (MQ=255) atatTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcact > 2:1240229/1‑76 (MQ=255) atatTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcact > 2:1240219/1‑76 (MQ=255) atatTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcact > 1:952905/1‑76 (MQ=255) atttattGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcactca < 1:1617654/76‑1 (MQ=255) atttattGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcactca < 1:770840/76‑1 (MQ=255) ttattGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcactcata < 2:986717/76‑3 (MQ=255) tagtGCATGTATAGGATGAAGCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACtt < 1:1492079/73‑1 (MQ=255) tGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCt < 1:683126/76‑1 (MQ=255) | AATGTCTTTTTTAGTATTTCCAAACGCAAAAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCT > REL606/2041730‑2041879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |