New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	2042218 =	56 (1.210)	6 (0.150)	6/134	3.8	10.5%	coding (603/1428 nt)	wzx	O antigen translocase (Wzx)
	?	REL606	2042455 =	52 (1.260)					coding (366/1428 nt)	wzx	O antigen translocase (Wzx)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTTTAGCTTGGATCTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAA  >  REL606/2042381‑2042529                                                                           |                                                                           cTTTTAGCTTGGATCTTAAAATTCACGTGTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATaa                                                                           <  1:1265284/76‑1 (MQ=255) cTTTTAGCTTGGATCTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATaa                                                                           <  2:1132340/76‑1 (MQ=255)  ttttAGCTTGGATCTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAAc                                                                          <  1:327643/76‑1 (MQ=255)  ttttAGCTTGGATCTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAAc                                                                          >  2:441305/1‑76 (MQ=255)   tttAGCTTGGATCTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACt                                                                         <  1:1301726/76‑1 (MQ=255)   tttAGCTTGGATCTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACt                                                                         <  1:1240951/76‑1 (MQ=255)    ttAGCTTGGATCTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACta                                                                        <  2:927346/76‑2 (MQ=255)    ttAGCTTGGATCTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTg                                                                        <  1:1466540/76‑1 (MQ=255)     tAGCTTGGATCTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGt                                                                       <  1:1177762/76‑1 (MQ=255)       gCTTGGATCTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTa                                                                     >  1:726497/1‑76 (MQ=255)        cTTGGATCTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTaa                                                                    >  2:307402/1‑76 (MQ=255)         ttGGATCTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAAt                                                                   <  1:1297020/76‑1 (MQ=255)         ttGGATCTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAAt                                                                   <  1:1452488/76‑1 (MQ=255)          tGGATCTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATg                                                                  >  1:619594/1‑76 (MQ=255)             aTCTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTa                                                               <  2:1067769/76‑1 (MQ=255)              tCTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTaa                                                              <  1:1215187/76‑1 (MQ=255)               cTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTaaa                                                             <  2:733098/76‑1 (MQ=255)                 tAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAat                                                           >  1:435586/1‑76 (MQ=255)                    aaTTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATc                                                        <  2:1351117/76‑1 (MQ=255)                     aTTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCa                                                       >  1:883876/1‑76 (MQ=255)                     aTTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCa                                                       >  1:1009868/1‑76 (MQ=255)                      ttCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCaa                                                      <  1:690089/76‑1 (MQ=255)                       tCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAg                                                     >  1:1153160/1‑76 (MQ=255)                          cGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTaa                                                  <  1:31887/76‑1 (MQ=255)                          cGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTaa                                                  <  1:5929/76‑1 (MQ=255)                           gTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTaaa                                                 <  1:461392/76‑1 (MQ=255)                            tCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAg                                                >  1:937231/1‑76 (MQ=255)                             cTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGa                                               <  1:1227417/76‑1 (MQ=255)                             cTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGa                                               <  1:131860/76‑1 (MQ=255)                                cAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCACGTAAAGATTc                                            >  1:630503/1‑76 (MQ=255)                                cAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTc                                            >  1:194984/1‑76 (MQ=255)                                    gAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCcagc                                        <  1:1120031/76‑1 (MQ=255)                                      gTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCcagcag                                      <  1:307402/76‑1 (MQ=255)                                        tGAATTTTGGCGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCagag                                    >  2:1302785/1‑76 (MQ=255)                                          aaTTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGt                                  <  2:211763/76‑1 (MQ=255)                                           aTTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTa                                 <  2:46020/76‑1 (MQ=255)                                             tttGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTAtt                               >  2:657474/1‑76 (MQ=255)                                              ttGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTAttt                              >  1:105987/1‑76 (MQ=255)                                              ttGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTAttt                              <  2:1169709/76‑1 (MQ=255)                                                ggggATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGa                            <  1:604048/76‑1 (MQ=255)                                                  ggATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATa                          <  2:636779/76‑1 (MQ=255)                                                  ggATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATa                          <  2:1153160/76‑1 (MQ=255)                                                   gATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAg                         <  1:323529/76‑1 (MQ=255)                                                    aTTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGa                        <  2:1189909/76‑1 (MQ=255)                                                     ttAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGaa                       <  1:1371955/76‑1 (MQ=255)                                                       aaaGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATa                     <  1:274199/76‑1 (MQ=255)                                                        aaGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTNTTTGATAGAATaa                    <  1:1005563/76‑1 (MQ=255)                                                            tAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCa                <  1:361617/76‑1 (MQ=255)                                                             aGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCaa               <  1:1118405/76‑1 (MQ=255)                                                              gACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAACGATTCCAGCAGAGGTATTTGATAGAATAAAGCAat              <  2:1322788/76‑1 (MQ=255)                                                                 cATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAAtata           >  1:1236393/1‑76 (MQ=255)                                                                  aTTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATaa          <  1:527467/76‑1 (MQ=255)                                                                    ttGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATaaga        <  1:1211791/76‑1 (MQ=255)                                                                       cTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAagaaga     <  2:560562/76‑1 (MQ=255)                                                                       cTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTAGATAGAATAAAGCAATATAagaaga     >  2:462527/1‑76 (MQ=255)                                                                        tataACTATTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGAt    >  1:956693/1‑76 (MQ=255)                                                                          taACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATaa  <  1:1228424/76‑1 (MQ=255)                                                                           |                                                                           CTTTTAGCTTGGATCTTAAAATTCACGTCTACAGTGAGTTGAATTTTGGGGATTAAAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAA  >  REL606/2042381‑2042529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.