| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,875,625 | 1 | . | T | 82.0% | 116.1 / 21.1 | 39 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (6/1); new base T (18/14); total (24/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
TAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGC > REL606/3875551‑3875694 | tAGCATTATTCAACNTACGCGTCCTGACTGTAATTTGAGAACTAATTTAAACCGCTTCACCTTAAAAAAACTACA‑‑t < 1:1572590/76‑1 (MQ=255) tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑t‑t‑tt‑ttt < 2:1127649/76‑1 (MQ=255) cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAGCCGCTTCACCTTGAAAAAACTACA‑‑T‑TCTT‑TTT‑CATCGt < 1:96203/76‑1 (MQ=255) tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGa > 2:1362227/1‑76 (MQ=255) cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGaaa < 1:1209082/76‑1 (MQ=255) gcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAAt > 1:340269/1‑76 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACaga < 1:1628711/76‑1 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑T‑T‑TTATTT‑CATCGTGAAATGGACaga > 2:738572/1‑76 (MQ=255) aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACagag < 1:1386655/76‑1 (MQ=255) tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGa > 1:533972/1‑76 (MQ=255) tGTAATTTGAGAACGAATCTANACNGCTTCACGTTGAAAAAACTACN‑‑T‑T‑TT‑TTTNCNTCGTGAAATGGACAGAGGa > 2:266340/1‑76 (MQ=255) gTAATTTGAGAACGAATTTAGACCGCTTCACCTTGAAAAAACTACA‑‑T‑T‑TT‑TTTGCATCGTGAAATGGACAGAGGAt > 2:153753/1‑76 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGAt > 2:1391379/1‑76 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑T‑TCTT‑TTT‑CATCGTGAAATGGACAGAGGAt > 1:176745/1‑76 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATa < 1:637491/76‑1 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATa > 1:758192/1‑76 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATa > 2:1068838/1‑76 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATa > 1:1174348/1‑76 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATa < 2:533971/76‑1 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATa > 1:1372706/1‑76 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATaa > 2:1736384/1‑76 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATaa < 1:956056/76‑1 (MQ=255) aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATaaa < 2:871982/76‑1 (MQ=255) ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAAtt > 1:904787/1‑76 (MQ=255) tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAGCTACA‑‑TNT‑TT‑TTT‑CATCGTGAAATGNACNGAGGATAAATTg > 1:1492033/1‑76 (MQ=255) tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTg > 2:1324975/1‑76 (MQ=255) tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTg > 1:836671/1‑76 (MQ=255) agaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTT‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTGt > 2:1355861/1‑76 (MQ=255) cGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATTAATTGTTCAAt < 1:100458/76‑1 (MQ=255) gAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATa > 2:877348/1‑76 (MQ=255) ttAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg < 1:529148/76‑1 (MQ=255) ttAAACCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg < 2:806807/76‑1 (MQ=255) aaCCGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 2:1772050/76‑1 (MQ=255) cGCTTCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATc > 1:1746487/1‑76 (MQ=255) cGCTTCACCTTGAAAAAACTACA‑‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc > 1:1737959/1‑76 (MQ=255) tCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg < 2:103165/76‑1 (MQ=255) tCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 1:419638/1‑76 (MQ=255) tCACCTTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 1:1706307/1‑76 (MQ=255) aCCGTGAAAAAACTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCt > 1:1691819/1‑76 (MQ=255) aaaaaaCTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa < 1:205690/76‑1 (MQ=255) aaaaaaCTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa < 2:753355/76‑1 (MQ=255) aCTACAT‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcgc < 1:632749/76‑1 (MQ=255) | TAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑T‑T‑TT‑TTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGC > REL606/3875551‑3875694 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |