| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4251744 | 88 (1.410) | 3 (0.050) | 3/136 | 6.6 | 3.8% | coding (1060/2823 nt) | uvrA | excinuclease ABC subunit A |
| ? | REL606 | = 4251997 | 71 (1.250) | coding (807/2823 nt) | uvrA | excinuclease ABC subunit A | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCAGCACGCCTTCGAACGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGACGTCGAACTT > REL606/4251669‑4251819 | gcagcaCGCCTTCGAACGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTc < 2:1074978/76‑1 (MQ=255) cagcaCGCCTTCGAACGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCt > 1:767591/1‑76 (MQ=255) cagcaCGCCTTCGAACGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCt < 2:1822069/76‑1 (MQ=255) agcaCGCCTTCGAACGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCtt < 1:266240/76‑1 (MQ=255) gcaCGCCTTCGAACGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCttt < 1:504420/76‑1 (MQ=255) cGCCTTCGAACGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGcc < 1:332381/76‑1 (MQ=255) gCCTTCGAACGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCa < 1:308859/76‑1 (MQ=255) gCCTTCGAACGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCa > 2:1002266/1‑76 (MQ=255) gCCTTCGAACGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCa > 1:482449/1‑76 (MQ=255) ccTTCGAACGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAg < 1:1123876/76‑1 (MQ=255) ccTTCGAACGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAg > 1:661034/1‑76 (MQ=255) cGAACGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAAcc > 1:439260/1‑76 (MQ=255) gAACGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCg > 1:869417/1‑76 (MQ=255) aaCGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGt < 1:687760/76‑1 (MQ=255) cGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAATCGTac > 1:767005/1‑76 (MQ=255) cGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTac > 2:1520794/1‑76 (MQ=255) cGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTac < 1:1483884/76‑1 (MQ=255) ggATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTaca < 2:1800387/76‑1 (MQ=255) ggATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTaca < 1:349675/76‑1 (MQ=255) gATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTacaa < 2:1806052/76‑1 (MQ=255) aTGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTacaac < 1:852065/76‑1 (MQ=255) tGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTacaaca > 2:256911/1‑76 (MQ=255) tGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTacaaca < 1:108680/76‑1 (MQ=255) gacgacGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAacac > 1:1522373/1‑76 (MQ=255) cgacgGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAAcacca < 1:513403/76‑1 (MQ=255) cgacgGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAAcacca < 2:1109527/76‑1 (MQ=255) gcgGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACACCACCACt < 1:1276641/75‑1 (MQ=255) acgGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACt < 1:1462240/76‑1 (MQ=255) ggATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACttt > 1:452374/1‑76 (MQ=255) ggATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACttt > 1:559900/1‑76 (MQ=255) aTGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTAt > 1:1962530/1‑76 (MQ=255) aTGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTAt > 2:683038/1‑76 (MQ=255) ggAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGc > 1:692507/1‑76 (MQ=255) gTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGt > 1:1757593/1‑76 (MQ=255) aTCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTc > 1:1749140/1‑76 (MQ=255) cGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTcgc > 2:1832066/1‑76 (MQ=255) ccACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCgcgc > 1:1277229/1‑76 (MQ=255) cACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCt < 1:1551253/76‑1 (MQ=255) cACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCt > 1:1531798/1‑76 (MQ=255) cACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCt < 2:85740/76‑1 (MQ=255) aCGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTc < 2:1624578/76‑1 (MQ=255) aCGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTc > 2:865745/1‑76 (MQ=255) aCGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTc > 1:426906/1‑76 (MQ=255) aTCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAg < 1:1886459/76‑1 (MQ=255) tCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGc > 1:1835706/1‑76 (MQ=255) tCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGc < 1:388236/76‑1 (MQ=255) tCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGc > 1:1966074/1‑76 (MQ=255) cGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCt < 2:1651517/76‑1 (MQ=255) gTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTg > 1:1180563/1‑76 (MQ=255) ttCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGc > 2:1356878/1‑76 (MQ=255) cATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGccc > 1:397415/1‑76 (MQ=255) cATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGccc > 2:51772/1‑76 (MQ=255) cATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGccc > 1:126269/1‑76 (MQ=255) aTGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGTGCTCAAGCTGcccc < 1:1064592/76‑1 (MQ=255) aTGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGcccc > 1:1864906/1‑76 (MQ=255) aTGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGcccc < 1:856144/76‑1 (MQ=255) aTGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGcccc < 1:71024/76‑1 (MQ=255) aTGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGcccc > 2:850089/1‑76 (MQ=255) gTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCAc < 2:661034/76‑1 (MQ=255) tATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACg > 1:822149/1‑76 (MQ=255) tttGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGgc < 1:1233221/76‑1 (MQ=255) ttGAATTTAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGgcg < 2:166902/76‑1 (MQ=255) ttGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGgcg > 2:1516367/1‑76 (MQ=255) ttGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGgcg > 1:479452/1‑76 (MQ=255) ttGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGgcg < 2:1185220/76‑1 (MQ=255) gAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCt > 2:587826/1‑76 (MQ=255) gAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGATGCCCCACGGCGCt > 2:1877007/1‑76 (MQ=255) aTTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTACGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTc < 2:1669167/76‑1 (MQ=255) ttCGATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCg < 1:1488008/76‑1 (MQ=255) ttCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCg > 1:1142946/1‑76 (MQ=255) tCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGa > 1:1415062/1‑76 (MQ=255) tCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGa > 1:1117789/1‑76 (MQ=255) tCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGa > 1:362273/1‑76 (MQ=255) cAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGAc > 1:1231052/1‑76 (MQ=255) cAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGAc < 2:1891894/76‑1 (MQ=255) aaTGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGACg > 2:972819/1‑76 (MQ=255) aTGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGACGt > 1:703842/1‑76 (MQ=255) tGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGACGTc < 2:1291334/76‑1 (MQ=255) tGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGACGTc < 1:1848955/76‑1 (MQ=255) gTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGACGTCg < 2:1982692/76‑1 (MQ=255) gTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGACGTCg > 2:227207/1‑76 (MQ=255) ttttCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGACGTCGa > 2:439918/1‑76 (MQ=255) tttCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGACGTCGaa > 2:1459098/1‑76 (MQ=255) tttCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGACGTCGaa < 1:568974/76‑1 (MQ=255) tttCTCTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGACGTCGaa < 2:1263978/76‑1 (MQ=255) tCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGACGTCGAACt < 2:990699/76‑1 (MQ=255) tCTTTGCAAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGACGTCGAACt > 1:1277416/1‑76 (MQ=255) cTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGACGTCGAACtt > 1:867563/1‑76 (MQ=255) cTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGACGTCGAACtt > 1:1879179/1‑76 (MQ=255) | GCAGCACGCCTTCGAACGGATGACGACGGATGGAGGTATCGCCACGATCGTTCATGTATTTGAATTCAATGTTTTCTTTGCCAGAACCGTACAACACCACTTTATGCACGTTCGCGCTCAAGCTGCCCCACGGCGCTTCGACGTCGAACTT > REL606/4251669‑4251819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |