| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2037554 = | 68 (1.090) | 3 (0.050) | 3/136 | 6.6 | 4.9% | coding (577/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | 2037718 = | 54 (0.950) | coding (413/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATATCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGC > REL606/2037647‑2037793 | atatCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACAtg > 1:244502/1‑76 (MQ=255) ccAACCACGCTGAAGAAAAGAAATAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGtt > 2:1908880/1‑76 (MQ=255) ccAACCACGCTGAAGAAAAGAAATAATCCACAACAGGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGtt > 2:1802400/1‑76 (MQ=255) cAACCACGCTGAAGAAAAGAAATAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTa < 1:1582164/76‑1 (MQ=255) aaCCACGCTGAAGAAAAGAAATAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAg < 1:1199996/76‑1 (MQ=255) aCCACGCTGAAGAAAAGAAATAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGa < 2:1307598/76‑1 (MQ=255) aCGCTGAAGAAAAGAAATAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAat > 2:919848/1‑76 (MQ=255) aCGCTGAAGAAAAGAAATAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAat < 1:1821698/76‑1 (MQ=255) aCGCTGAAGAAAAGAAATAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAat > 2:1603540/1‑76 (MQ=255) cGCTGAAGAAAAGAAATAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAata > 1:1315034/1‑76 (MQ=255) gCTGAAGAAAAGAAATAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAatat < 1:677500/76‑1 (MQ=255) gCTGAAGAAAAGAAATAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAatat < 2:1407522/76‑1 (MQ=255) gaagaaAAGAAATAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTaa < 1:1776616/76‑1 (MQ=255) gaagaaAAGAAATAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTaa > 2:1019713/1‑76 (MQ=255) aagaaaagaaATAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTaaa < 1:159342/76‑1 (MQ=255) aagaaaagaaATAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTaaa > 1:154293/1‑76 (MQ=255) agaaaagaaaTAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTaaaa < 1:20467/76‑1 (MQ=255) aaaagaaaTAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACa > 2:919914/1‑76 (MQ=255) aaaagaaaTAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACa < 1:1866974/76‑1 (MQ=255) gaaaTAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTa < 2:414584/76‑1 (MQ=255) aataatCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACa > 1:1790823/1‑76 (MQ=255) aatCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCa < 2:108262/76‑1 (MQ=255) aatCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCa > 1:1928687/1‑76 (MQ=255) atCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCaa < 1:167352/76‑1 (MQ=255) atCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCaa < 1:199140/76‑1 (MQ=255) atCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCaa < 1:199132/76‑1 (MQ=255) atCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCaa > 1:1708247/1‑76 (MQ=255) acaacaTGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACAtt > 2:1554744/1‑76 (MQ=255) acaacaTGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACAtt > 1:965813/1‑76 (MQ=255) acaacaTGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAACATTAAAACAAGAACATAAACAtc > 2:978810/1‑75 (MQ=255) acaacaTAATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACAtt > 1:1282174/1‑76 (MQ=255) caacaTGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTc < 1:534238/76‑1 (MQ=255) aacaTGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCa > 2:756257/1‑76 (MQ=255) aacaTGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCa > 2:646163/1‑76 (MQ=255) aacaTGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCa < 2:1375072/76‑1 (MQ=255) acaTGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAg > 1:30537/1‑76 (MQ=255) caTGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGt > 1:427765/1‑76 (MQ=255) aTGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTa > 1:1576996/1‑76 (MQ=255) tGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTaa < 1:1636445/76‑1 (MQ=255) ataataATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATa < 2:1332630/76‑1 (MQ=255) ataataATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATa < 2:1502549/76‑1 (MQ=255) taataaTGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATAc < 1:842595/76‑1 (MQ=255) taatGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACaaa > 1:1740307/1‑76 (MQ=255) taatGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACaaa < 1:1329262/76‑1 (MQ=255) atGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATa < 1:1143016/76‑1 (MQ=255) atGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATa > 2:1008968/1‑76 (MQ=255) cTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCt < 1:1802400/76‑1 (MQ=255) cTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCt < 2:807753/76‑1 (MQ=255) gTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGaa > 1:1916963/1‑76 (MQ=255) gTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGaa < 1:1308087/76‑1 (MQ=255) ttacttGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTa > 2:1699906/1‑76 (MQ=255) tacttGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTAc > 2:644148/1‑76 (MQ=255) tacttGTATTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTAc > 1:1288233/1‑76 (MQ=255) ttGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTActcc < 2:1751961/76‑1 (MQ=255) tttAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTActccgcct > 2:1395294/1‑76 (MQ=255) tttAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTActccgcct > 1:1011844/1‑76 (MQ=255) tttAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTActccgcct > 1:736391/1‑76 (MQ=255) tttAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTActccgcct > 1:1901678/1‑76 (MQ=255) tAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTActccgcctcc > 2:347156/1‑76 (MQ=255) aaCATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTActccgcctccg > 2:1671989/1‑76 (MQ=255) aCATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTActccgcctccgc > 2:1293093/1‑76 (MQ=255) | ATATCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGATAATAATGGGCTTGTACTTACTTGTTTTAACATGTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGC > REL606/2037647‑2037793 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |