New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2114339 = | 47 (0.950) | 5 (0.110) | 5/140 | 4.7 | 8.5% | coding (335/1968 nt) | ECB_02001 | hypothetical protein |
? | REL606 | 2114530 = | 64 (1.390) | coding (144/1968 nt) | ECB_02001 | hypothetical protein | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
ATAGAAGTTTATCGTTGTAAGTTTGATGATTTACATAAACACTTTCCGAAAAAATACGCTCCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2114403‑2114339 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctaaAAGATAATTAATAAACTCCAGAATACTTGACTTACCTGTGTCAGAGTCTCCGTAGATAACATTGAGACCTTTA > REL606/2114530‑2114602 ATAGAAGTTTATCGTTGTAAGTTTGATGATTTACATAAACACTTTCCGAAAAAATACGCTCCTAAAAGATAATTAA < 2:935438/76‑1 GAAGTTTATCGTTGTAAGTTTGATGATTTACATAAACACTTTCCGAAAAAATACGCTCCTAAAAGATAATTAATAA < 2:1246464/76‑1 GTTTATCGTTGTAAGTTTGATGATTTACATAAACACTTTCCGAAAAAATACGCTCCTAAAAGATAATTAATAAACT < 2:290645/76‑1 GTTGTAAGTTTGATGATTTACATAAACACTTTCCGAAAAAATACGCTCCTAAAAGATAATTAATAAACTCCAGAAT < 2:609215/76‑1 TTGTAAGTTTGATGATTTACATAAACACTTTCCGAAAAAATACGCTCCTAAAAGATAATTAATAAACTCCAGAATA < 2:210588/76‑1 CTAAAAGATACTTAATAAACTCCAGAATACTTGACTTACCTGTGTCAGAGTCTCCGTAGATAACATTGAGACCTTT < 2:1126150/76‑1 CTAAAAGATAATTANTAAACTCCAGAATACTTGACTTACCTGTGTCAGAGTCTCCGTAGATAACATTGAGACCTTT > 1:873803/1‑76 CTAAAAGATAATTAATAAACTCCAGAATACTTGACTTACCTGTGTCAGAGTCTCCGTAGATAACATTGAGACCTTT > 1:1264731/1‑76 TAAAAGATAATTAATAAACTCCAGAATACTTGACTTACCTGTGTCAGAGTCTCCGTAGATAACATTGAGACCTTTA > 2:56717/1‑76 ATAGAAGTTTATCGTTGTAAGTTTGATGATTTACATAAACACTTTCCGAAAAAATACGCTCCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2114403‑2114339 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctaaAAGATAATTAATAAACTCCAGAATACTTGACTTACCTGTGTCAGAGTCTCCGTAGATAACATTGAGACCTTTA > REL606/2114530‑2114602 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |