| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2042003 | 34 (1.540) | 4 (0.190) | 3/144 | 2.7 | 11.2% | coding (818/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | = 2042213 | 31 (1.460) | coding (608/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGGAAAAACTACAACGCCTGCAATTTTAAGTGTGTTTAAATAAGCATCATCTATTTTCCCTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGAT > REL606/2041929‑2042078 | ttGGAAAAACTACAACGCCTGCAATTTTAAGTGTGTTTAAATAAGCATCATCTATTTTCCCTTTGCCATTATAAat < 2:444694/76‑1 (MQ=255) aCTACAACGCCTGCAATTTTAAGTGTGTTTAAATAAGCATCATCTATTTTCCCTTTGCCATTATAAATATTACaaa < 1:692253/76‑1 (MQ=255) aCAACGCCTGCAATTTTAAGTGTGTTTAAATAAGCATCATCTATTTTCCCTTTGCCATTATAAATATTACaaaaaa > 2:641825/1‑76 (MQ=255) aaCGCCTGCAATTTTAAGTGTGTTTAAATAAGCATCATCTATTTTCCCTTTGCCATTATAAATATTACAAAAAAGt > 2:105302/1‑76 (MQ=255) aCGCCTGCAATTTTAAGTGTGTTTAAATAAGCATCATCTATTTTCCCTTTGCCATTATAAATATTACAAAAAAGTg < 2:216991/76‑1 (MQ=255) ccTGCAATTTTAAGTGTGTTTAAATAAGCATCATCTATTTTCCCTTTGCCATTATAAATATTGCAAAAAAGTGGAt < 1:548678/76‑1 (MQ=255) tGCAATTTTAAGTGTGTTTAAATAAGCATCATCTATTTTCCCTTTGCCATTATAAATATTACAAAAAAGTGGATaa < 2:167608/76‑1 (MQ=255) aTTTTAAGTGTGTTTAAATAAGCATCATCTATTTTCCCTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTa < 2:692442/76‑1 (MQ=255) aTTTTAAGTGTGTTTAAATAAGCATCATCTATTTTCCCTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTa > 1:701181/1‑76 (MQ=255) gtgtgtTTAAATAAGCATCATCTATTTTCCCTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTg > 2:395943/1‑76 (MQ=255) tgtgtTTAAATAAGCATCATCTATTTTCCCTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGa > 1:14804/1‑76 (MQ=255) tgtTTAAATAAGCATCATCTATTTTCCCTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGaat > 1:161827/1‑76 (MQ=255) gtTTAAATAAGCATCATCTATTTTCCCTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGaata > 1:244324/1‑76 (MQ=255) tAAATAAGCATCTTCTTTTTTCCTTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAataata < 1:324723/76‑1 (MQ=255) tAAATAAGCATCATCTATTTTCCCTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAataata < 1:61097/76‑1 (MQ=255) aaGCATCATCTATTTTCCCTTTGCTAT‑‑GAAAcattcaaaaagctattttcatttagcagtaacttactaattgctg > 2:89325‑M1/1‑31 (MQ=255) aaGCATCATCTATTTTCCCTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGt > 1:89325/1‑76 (MQ=255) catcatCTATTTTCCCTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAg > 1:439563/1‑76 (MQ=255) tcatcTATTTTCCCTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAgtg < 2:327236/76‑1 (MQ=255) tcatcTATTTTCCCNTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAgtg > 1:390464/1‑76 (MQ=255) atcTATTTTCCCTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAGTGTc > 1:115373/1‑76 (MQ=255) atcTATTTTCCCTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAGTGTc > 1:115367/1‑76 (MQ=255) aTTTTCCCTTTGCCNTTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAGTGTCATTg > 1:391182/1‑76 (MQ=255) aTTTTCCCTTTGCCNTTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAGTGTCATTg > 1:391175/1‑76 (MQ=255) aTTTTCCCTTTGCCATTATAAAcattcaaaaagctattttcatttagcagtaacttactaattgctggagtacttg > 2:391182‑M1/1‑22 (MQ=255) aTTTTCCCTTTGCCATTATAAAcattcaaaaagctattttcatttagcagtaacttactaattgctggagtacttg > 2:391175‑M1/1‑22 (MQ=255) ttttCCCTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAGTGTCATTGc > 1:156583/1‑76 (MQ=255) ttCCCTTTGCCATTATAAAcattcaaaaagctattttcatttagcagtaacttactaattgctggagtacttgaag > 2:375743‑M1/1‑19 (MQ=255) ttCCCTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAGTGTCATTGCAg > 1:375743/1‑76 (MQ=255) cccTTTGCCATTATAAATATTACAAAAAAGTGGGTAAGTTACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGt > 1:651745/1‑76 (MQ=255) cTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGTAc < 2:459581/76‑1 (MQ=255) tttGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGTACg < 1:335008/76‑1 (MQ=255) ttGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGTACGc > 2:32698/1‑76 (MQ=255) tGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGTACGCt > 1:357960/1‑76 (MQ=255) aTTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGTACGCTagag < 1:271234/76‑1 (MQ=255) tataAATATTACAAAAAAGCGGATAAGTTACTCTCTGAATAATATTAGCAAGTGTCATTGCAGCTACGCTAgagac > 2:105193/1‑75 (MQ=255) ataAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATc < 1:94840/76‑1 (MQ=255) atatTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGAt < 1:50260/76‑1 (MQ=255) acattcaaaaagctattttcatttagcagtaacttactaattgctggagtacttgaagctttttattcaaatatat > 1:566264‑M1/1‑1 (MQ=255) | TTGGAAAAACTACAACGCCTGCAATTTTAAGTGTGTTTAAATAAGCATCATCTATTTTCCCTTTGCCATTATAAATATTACAAAAAAGTGGATAAGTTACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGAT > REL606/2041929‑2042078 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |