| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3739626 | 32 (1.450) | 3 (0.150) | 3/140 | 2.7 | 10.4% | coding (340/1026 nt) | waaW | UDP‑galactose:(Galactosyl) LPS alpha1,2‑galactosyltransferase |
| ? | REL606 | = 3739937 | 22 (1.070) | coding (29/1026 nt) | waaW | UDP‑galactose:(Galactosyl) LPS alpha1,2‑galactosyltransferase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATCCAGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAGGCATTGG > REL606/3739551‑3739700 | aTCCAGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTG < 1:600644‑M1/76‑1 (MQ=255)aTCCAGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTG < 1:543108‑M1/76‑1 (MQ=255) ncAGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGa > 1:138784/2‑76 (MQ=255) cTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGc < 2:313221/76‑1 (MQ=255) aaTGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCaa > 1:678407/1‑76 (MQ=255) aaTGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCaa < 1:496193/76‑1 (MQ=255) aTGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAAc < 2:415601/76‑1 (MQ=255) aGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTaa < 2:285953/76‑1 (MQ=255) aCATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTg < 2:343923/76‑1 (MQ=255) gCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAg < 2:157602/76‑1 (MQ=255) gCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAg < 1:50851/76‑1 (MQ=255) cATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGa > 1:250353/1‑76 (MQ=255) cATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGa > 1:469583/1‑76 (MQ=255) aTCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGgaa > 1:124844/1‑60 (MQ=255) aTCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGgaa < 2:124844/60‑1 (MQ=255) aTCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGAc > 2:153956/1‑76 (MQ=255) gATATATAACAGATTTTCAATAGTTTCACTCAGATACTTGAACGCCACTAAACGGAAGCATGTTGCATAAGACCAc > 1:245224/1‑76 (MQ=255) gATATATAACAGATTTTCAATAGTTTCACTCAGATACTGaaatcgctgtctctggggaaattgctaacaccgatcg > 2:245224‑M1/1‑39 (MQ=255) gATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCAc > 1:341324/1‑76 (MQ=255) tatataACAGATTTTCAATAGTTTCACTCAGATACTGaaatcgctgtctctggggaaattgctaacaccgatcgtg > 2:252174‑M1/1‑37 (MQ=255) tatataACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTg > 2:87322/1‑76 (MQ=255) tatataACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTg > 1:252174/1‑76 (MQ=255) tatataACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTg > 2:284131/1‑76 (MQ=255) atataACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGt > 2:685298/1‑76 (MQ=255) tataACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGtt > 2:255667/1‑76 (MQ=255) ataACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGttt < 2:398462/76‑1 (MQ=255) tttCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTggg > 2:562020/1‑76 (MQ=255) ngTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGata > 1:619448/2‑76 (MQ=255) aGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGata > 2:463156/1‑76 (MQ=255) aGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGata > 1:44535/1‑76 (MQ=255) ttCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCa > 1:251451/1‑76 (MQ=255) tCACTCAGATACTGaaatcgctgtctctggggaaattgctaacaccgatcgtgtgttaaatatcgcttacggtatt > 2:80488‑M1/1‑14 (MQ=255) tCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCaa > 1:80488/1‑76 (MQ=255) aCTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATa > 1:133897/1‑76 (MQ=255) cAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAg < 1:416879/76‑1 (MQ=255) aTACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAGGCa > 1:413804/1‑76 (MQ=255) tACTGaaatcgctgtctctggggaaattgctaacaccgatcgtgtgttaaatatcgcttacggtattgaccgtaac < 2:67740‑M1/76‑72 (MQ=255) cTGaaatcgctgtctctggggaaattgctaacaccgatcgtgtgttaaatatcgcttacggtattgaccgtaactt > 2:287042‑M1/1‑3 (MQ=255) cTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAGGCATTg > 1:686263/1‑76 (MQ=255) tGaaatcgctgtctctggggaaattgctaacaccgatcgtgtgttaaatatcgcttacggtattgaccgtaacttt > 1:70267‑M1/1‑2 (MQ=255) ngaaatcgctgtctctggggaaattgctaacaccgatcgtgtgttaaatatcgcttacggtattgaccgtaacttt > 1:564135‑M1/2‑2 (MQ=255) | ATCCAGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAGGCATTGG > REL606/3739551‑3739700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |