| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2040964 = | 21 (0.950) | 7 (0.340) | 4/140 | 2.3 | 17.6% | coding (420/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041449 = | 46 (2.230) | coding (1372/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATCGTTCATTTTCAGTCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATT > REL606/2041374‑2041524 | tATCGTTCATTTTCAGTCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAAt > 1:16781/1‑76 (MQ=255)tATCGTTCATTTTCAGTCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAAt < 1:283227/76‑1 (MQ=255) tCGTTCATTTTCAGTCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTa < 1:377369/76‑1 (MQ=255) agaacaggctattacaccaaaaacttcagcaattttacctgtccattgctactcaacgccctgtgaagtcgaaTTa < 2:377369‑M2/3‑1 (MQ=255) cGTTCATTTTCAGTCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAg < 1:250572/76‑1 (MQ=255) cGTTCATTTTCAGTCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAg < 1:250579/76‑1 (MQ=255) ttCATTTTCAGTCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAgtg > 1:72621/1‑76 (MQ=255) ggctattacaccaaaaacttcagcaattttacctgtccattgctactcaacaccctgtgaagtcgaaTTAGTGTGa < 2:321110‑M2/9‑1 (MQ=255) aTTTTCAGTCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGtgtgn < 1:321110/76‑2 (MQ=255) ttttCAGTCCTTANTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGAt > 1:482734/1‑76 (MQ=255) aGTCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGtata < 1:334918/76‑1 (MQ=255) gTCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGtatat < 1:334563/76‑1 (MQ=255) gTCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGtatat < 1:345282/76‑1 (MQ=255) gTCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGtatat < 1:208835/76‑1 (MQ=255) acaccaaaaacttcagcaattttacctgtgcattgctactcaacaccctgtgaagtcgaaTTAGTGTGATGtatat < 2:345282‑M2/16‑1 (MQ=255) acaccaaaaacttcagcaattttacctgtccattgctactcaacaccctgtgaagtcgaaTTAGTGTGATGtatat < 2:208835‑M2/16‑1 (MQ=255) acaccaaaaacttcagcaattttacctgtccattgctactcaacaccctgtgaagtcgaaTTAGTGTGATGtatat < 2:334563‑M2/16‑1 (MQ=255) ccTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATaa < 1:351045/76‑1 (MQ=255) ccTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATaa < 1:351050/76‑1 (MQ=255) accaaaaacttcagcaattttacctgtccattgctactcaacaccctgtgaagtcgaaTTAGTGTGATGTATATaa < 2:351050‑M2/18‑1 (MQ=255) accaaaaacttcagcaattttacctgtccattgctactcaacaccctgtgaagtcgaaTTAGTGTGATGTATATaa < 2:351045‑M2/18‑1 (MQ=255) cTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAAt < 2:440967/76‑1 (MQ=255) tATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATgg < 1:290587/76‑1 (MQ=255) tttttttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCa < 1:684065/76‑1 (MQ=255) tttttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCAtt < 1:610178/76‑1 (MQ=255) ttttATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCAttt < 1:474798/76‑1 (MQ=255) ataAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTtaata > 1:316889/1‑76 (MQ=255) taAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTtaataa > 2:461648/1‑76 (MQ=255) taAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTtaataa > 2:576292/1‑76 (MQ=255) agagAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATaaaa < 1:491116/76‑1 (MQ=255) gagaAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAAt < 1:147101/76‑1 (MQ=255) gagaAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAAt < 1:160912/76‑1 (MQ=255) agaAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATa < 2:673019/76‑1 (MQ=255) agaAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATa < 2:673026/76‑1 (MQ=255) aataatAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTa < 1:706710/76‑1 (MQ=255) ataataGTCATAAATATTTCTTTGTAGATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTaa < 1:659060/76‑1 (MQ=255) ataataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTaa > 1:115415/1‑76 (MQ=255) ataataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTaa < 2:659060/76‑1 (MQ=255) ataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAGAATAGTAAata > 2:619051/1‑76 (MQ=255) ataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAGTAGTAAata > 1:306430/1‑76 (MQ=255) ataGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAata > 1:306429/1‑76 (MQ=255) taGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatat > 1:14219/1‑76 (MQ=255) aTAAATATTGCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattatat < 1:253813/76‑1 (MQ=255) aaTATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTta > 2:433521/1‑76 (MQ=255) atatTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaa > 1:132058/1‑76 (MQ=255) tttCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaataa < 1:3812/76‑1 (MQ=255) tCTTTGTACATAATTCGAATTGGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAg > 1:649690/1‑76 (MQ=255) tCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAg > 1:649683/1‑76 (MQ=255) tttGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGt > 2:188438/1‑76 (MQ=255) gTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTcc > 2:77466/1‑76 (MQ=255) tAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACt < 1:247910/76‑1 (MQ=255) aaTTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACtt < 1:534753/76‑1 (MQ=255) aaTTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACta > 1:121051/1‑75 (MQ=255) tcgaaTTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTAtt < 2:578412‑M2/71‑1 (MQ=255) ttAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCAtt < 1:647650/76‑1 (MQ=255) | TATCGTTCATTTTCAGTCCTTATTTTTTTATAAGAGAAATAATAGTCATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATT > REL606/2041374‑2041524 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |