| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,145,853 | G→A | intergenic (+184/‑11) | dnaG → / → rpoD | DNA primase/RNA polymerase sigma factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,145,853 | 0 | G | A | 100.0% | 70.9 / NA | 19 | intergenic (+184/‑11) | dnaG/rpoD | DNA primase/RNA polymerase sigma factor |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (8/11); total (8/11) | |||||||||||
GGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTA > REL606/3145784‑3145925 | ggATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGAATACCg < 1:95601/76‑1 (MQ=255) tttCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGAATACCGTCt < 2:174227/76‑1 (MQ=255) tCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGAATACCGTCTTa < 1:659549/76‑1 (MQ=255) aGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGAATACCGTCTTATg < 1:257003/76‑1 (MQ=255) gCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGATTACCGTCTTATgg < 1:471843/76‑1 (MQ=255) gCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGAATACCGTCTTATgg < 2:689096/76‑1 (MQ=255) aaGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGAATACCGTCTTATGGAGCAAAACCCGCa > 1:41067/1‑76 (MQ=255) gACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGAATACCGTCTTATGGAGCAAAACCCGCAGTc < 1:11608/76‑1 (MQ=255) gACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGAATACCGTCTTATGGAGCAAAACCCGCAGTc < 2:494527/76‑1 (MQ=255) gACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGAATACCGTCTTATGGAGCAAAACCCGCAGTc > 2:594312/1‑76 (MQ=255) cATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGAATACCGTCTTATGGAGCAAAACCCGCAGTcac < 2:20522/76‑1 (MQ=255) aTCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGAATACCGTCTTATGGAGCAAAACCCGCAGTcaca > 1:393871/1‑76 (MQ=255) cAATCGCCCAACACCAACCTCATGAAATAAGTGTGAATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGaaa < 1:410518/76‑1 (MQ=255) aaCACCAACCTCATGAAATAAGTGTGAATACCGTCTTATGGAGCAAACCCCGCAGTCACAGCTGAAACTTCTTGTc > 1:552664/1‑76 (MQ=255) aaCACCAACCTCATGAAATAAGTGTGAATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTc > 2:167627/1‑76 (MQ=255) aaCACCAACCTCATGAAATAAGTGTGAATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTc > 2:421104/1‑76 (MQ=255) ccTCATGAAATAAGTGTGAATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACCCGTgg > 1:703571/1‑76 (MQ=255) aaaTAAGTGAGAATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACCCGTGGTAAGGAg > 2:210410/1‑76 (MQ=255) gtgAATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTa < 2:595879/76‑1 (MQ=255) | GGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTA > REL606/3145784‑3145925 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |