| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,665,698 | 0 | T | C | 46.9% | 71.7 / 76.1 | 97 | D38G (GAT→GGT) | gadX | acid resistance regulon transcriptional activator; autoactivator |
| Reads supporting (aligned to +/- strand): ref base T (37/14); new base C (0/45); total (37/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.58e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTG > NC_000913/3665548‑3665842 | ctacAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCAt > 1:1052850/1‑151 (MQ=255) acAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATc > 2:741069/1‑150 (MQ=255) gTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCa > 2:648337/1‑151 (MQ=255) gatgaACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCaaa > 1:735160/1‑151 (MQ=255) gaACGAGTAATGAATAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACTCACTTATCTACTCGAA‑TTTGGCTTGCATCCGCaaaaa > 2:1048814/1‑150 (MQ=255) gTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAACTTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑t > 2:624198/1‑150 (MQ=255) aCTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTaa > 1:1229192/1‑151 (MQ=255) cTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTaaa > 2:31763/1‑151 (MQ=255) cTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTaaa > 2:904098/1‑151 (MQ=255) cTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTaaa > 2:584707/1‑151 (MQ=255) tttttATGTGAATGAAGTTTTAATGCCTCCTCCTTGAACACGGGGAAAAAAAATAAAAGCGTGTCCCTTG‑ACACAAATAAAAAATTTTC‑AACACCCTTATCTCCTCGAA‑TTTGGTTTGCACCCGAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAAt < 1:261233/151‑1 (MQ=255) tttATGTGCATAAAGTTTTAATGCCTCCTCCTTGAGCATGGGAAAAAAAAATGAAAGCGTGTCCCTTG‑ACACAAAAAAAAATTTTTC‑AACACTTTTATTTCATCAAT‑TTTGGCTTCAACCCGAAAAAACAA‑GG‑T‑C‑ACCGCCATTAAAATAg < 2:1162669/151‑1 (MQ=255) ttaaTGTGCTAGAAGATTTAATCCCTCCCCCTTAAGCAGCGGGAAAAAAAATGAAAGCGTGTCCCTTG‑ACACAAATACAAAATTTCC‑ACCCCCCTTATCAACAAGAA‑TTTGGCTTGCACCCGAAAAAACCG‑GG‑T‑C‑ACCGCCATTAAAATAg < 2:402790/148‑1 (MQ=255) gCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATAtt > 2:710487/1‑151 (MQ=255) taaaGTTTAAATCCCCCCTCCTTGACAATCGGAAAAAATAATAAAAGCGTGTCCCTTG‑ACCCGAAAACAAAATTTCC‑ACCTCCCTTATCTACCTGAT‑TTTGTCTTCCATCCGAAAAAACCA‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCAc < 2:891422/149‑1 (MQ=255) tGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCa > 2:90364/1‑150 (MQ=255) aaaaaTTTAATGCCCCCCCCTTGAGAATCGGGAAAAAAAATGAAAGCGTGTCCCTTG‑ACACAAATAAAAAATTTTC‑AACACCCTTATCTACTCAAA‑TTTGGCTTGCACCCGAAAAAACCA‑GG‑T‑C‑CCCGCCATTAAAATAGCGATATTCAcc < 1:304610/147‑1 (MQ=255) gATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGCATACAAAATTTTC‑AACACACTTATCTACTCGAC‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCAtt > 2:1023557/1‑151 (MQ=255) aTTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTa > 1:462843/1‑151 (MQ=255) aTTTAATCCCTCCCCCTTGAGCATGGGGAAAAAAAATAAAAGCGTGCCCCTTG‑ACAAGAAAAAAAAATTTTC‑AACACACTTATCTACTCAAA‑TTGGGCTTGCCCCCGAAAAACCCA‑GG‑T‑C‑CCCGCCATTAAAATAGCGATATTCACCAt < 1:36055/149‑1 (MQ=255) tttAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTaa > 2:1151091/1‑151 (MQ=255) tttAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTaa > 1:481534/1‑151 (MQ=255) ttAATGCCTCCTCCTGGAGCATCGGGAAAAATAATGAAAGCGTGTCCTTTG‑ACACGAATAAAAAATTTTC‑AACACACTTATCTTCAAGAA‑TTGGGCTTGCACCCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAc < 2:885783/151‑1 (MQ=255) tattGCCCCCTCCTTGAGCAGCGGAAAAAATAATGAAGGCGTGTCCGTTA‑ACAAGAATAAAAAATTTTC‑AACACCCTTATCTCCTCAAT‑TTTGGTTGGCATCC‑AAAAAACCC‑GG‑TGC‑CCCGCCATTAAAATAGCGATATTCACCATTAAcc < 2:170679/148‑1 (MQ=255) taagccctccccctTGAGCATCGGGAAAAATAATAAAAGCGTCCCCCTTA‑ACACAAATACAAAATTTTC‑AACCCATTTATTAACTAAAT‑TTTGCCTTCCACCCGCAAAACCAA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc < 1:46322/146‑1 (MQ=255) tAATGCCTCCTCCGTGAGAATGGGAAAAAAAAAGAAAAGCTTGTCCCTTG‑AAACGAATAAAAAATTTCC‑AACACTCTTATATACACGAT‑TTGGGCTTGCACCCAAAAAAACCA‑GG‑C‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc < 2:766753/151‑1 (MQ=255) tAATGCCCCCTCCTTGAGCATCGGGAAAAATAATGAAGGCGTGCCCTTGG‑ACAAGAATAAAAAATTTCC‑AACCCATTTATCTCCTCAAT‑TTGGGCTTGCACCCGAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc < 2:557069/151‑1 (MQ=255) tAATGCCCCCCCCTTGACCATCGGGAAAAATAATGAAAGCGTGTCCCTTA‑ACACAAATAAAAAATTTTC‑AACACCCTTATCTACTCGAT‑TTTGGCTTGCACCCCAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc < 1:1257865/151‑1 (MQ=255) tAATCCTTCTTCCTTGACCATGGTGAAAAAGAAGGAAGGCTTATCCTTAA‑ACACTAATACAAAATTTTA‑AACCCACTTATCTATTCGTA‑TTGGGCTTGC‑CCCCAAAAAACCC‑TG‑T‑CTACCGCCATTAAAATAGCGATATTCACCATTAAcc < 2:732103/151‑1 (MQ=255) tAATCCCTCCTCCTTAACCATCGGAAAAAAAAATGAAGGTTTTTCCCTTA‑CCACAAATAAAAATTTTCC‑AACACCCTTTTCTACCCAAT‑TTGGGCTTGCACCCAAAAAAACCG‑GG‑C‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc < 2:947743/151‑1 (MQ=255) tAATCCCCCCTCTTGGAGCACGGGGAAAAAAAATAAAAGCGTGCCCTTTG‑ACAAAAAAAAAAAATTTCA‑AACACATTTATCTACTAAAT‑TTTGGCTTCCACCCGAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc < 1:60255/151‑1 (MQ=255) tAATCCCCCCTCCTTGAGCATGGGGAAAAAAAATAAACGCGTCTCCTTTG‑ACACAAAAAAAAAATTTTC‑AACCCCCTTACCAACTAGAA‑TTGGGTTCCCACCCGAAAAACCCG‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc < 2:589251/151‑1 (MQ=255) tAATCCCCCCTCCTGGAGCATGGGGAAAAAAAATAAAAGCGTTCCCCTTG‑ACAAAAATAAAAAATTTTC‑AACACACTTATCTTCTCGAT‑TTTGGCTTGCACCCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc < 1:398747/151‑1 (MQ=255) tAATCCCCCCCCCTTGAGCATCGGGAAAAATAAAGAAAGCGTGCCCCTTG‑ACAAAAATAAAAAATTTTC‑AACACATTTATCTCCTCAAT‑TTTGGCTTGCACCCGAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc < 1:370462/151‑1 (MQ=255) aaaTCCCTCCTCTTGGACCATCGGGAAAAAAAATGAAAGCGTTCCCTTTG‑ACACAATTACAAAATTTCC‑ACCCCCCTTATCTTCTCAAT‑TTTGCCTTCCACCCGCAAAACCCA‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc < 2:96577/150‑1 (MQ=255) atccctcctcctTGAGCATGGGGAAAAAAAATGAAGGCGTGCCCCTTG‑ACACAAAAAAAAAATTTTC‑AACCCACTTATCTACCCAAA‑TTTGGCTTGCATCCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCAt < 1:1070638/148‑1 (MQ=255) cctcctcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGt > 2:280085/1‑151 (MQ=255) cccctcttGGAGCATCGGGAAAAAAAATGAAAGCGTGCCCCTTG‑ACACAAAAAAAAAATTTAC‑AACACTCTTATCTCCGCAAA‑TTTGGCTTGCACCCGAAAAAACCA‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg < 1:901161/149‑1 (MQ=255) tcctcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTga > 1:53928/1‑151 (MQ=255) tcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa > 2:233722/1‑151 (MQ=255) tcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa > 2:802349/1‑151 (MQ=255) cctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAat > 1:521964/1‑151 (MQ=255) accATGGGGAGAAAAAATAAAGGCGTGCCCCTGG‑ACAAAAATAAAAATTTTTA‑AACACACTTATCTACTCGAT‑TTTGGTTTGCACCCAAAAAACCAA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt < 2:1013059/149‑1 (MQ=255) accATCGGAAAAAATAAAGAAAGCTTGTCCTTGG‑CCACAAAAAAAAAATTTAA‑AACACACTTATCTACGCGAA‑TTTGCTTAGCATCCGAAAAACCCA‑GG‑C‑A‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt < 1:847636/149‑1 (MQ=255) caaaggggAAAAAAAATAAAAGCTTTCCCTTTG‑ACCCAAATACAAAATTTCC‑ACCCCATTTTTCTCCTCAAT‑TTTGGCTTGCACCCAAAAAAACCA‑GG‑G‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt < 1:398025/145‑1 (MQ=255) acATCGGAAGAAATAATAAAAGCGTCTCCTTTG‑ACACAAATACAAAATTTAC‑AACACACTTATCTACTAAAA‑TTTGTCTTCCACCCGAAAAAACCA‑GG‑C‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt < 2:772007/149‑1 (MQ=255) cctcgagaaaaaagatGAAAGCGTGCCCTTTG‑ACAGAAAAAAAAAATTTAC‑ACCCCCCTTATCTACTGGAA‑TTTGTCTTCCACCCAAAAAACCCG‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt < 2:1075075/135‑1 (MQ=255) cATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTa > 2:752146/1‑151 (MQ=255) aaTCGGGAAAAATAATGAAAGCGTGCCCTTTG‑ACAAAAAAAAAAATTTTCC‑ACCACCCTTCTCTACTCAAT‑TTTGTTTTGCACCCGAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt < 2:1182713/148‑1 (MQ=255) aaTCGGGAAAAATAATAAAAGCGTGTCCTTTG‑ACAAAAATAAAAAATTTAC‑AACACACTTATCTCCTAGAT‑TTTGGTTTGCACCCAAAAAAACCA‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTa < 2:948242/150‑1 (MQ=255) tgggaaaaaaTAATAAAAGC‑TTTCCCTTGAACACAAATACAAAATTTTA‑ACCACACTT‑TTAACCAGAATTTTTTGTTGCACCAGAAAAAACAA‑GG‑T‑C‑CCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATg < 2:208921/144‑1 (MQ=255) cGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACAAATACAAAATTTTC‑AACACACTTATCTCCTCAAT‑TTTGGTTTGCATCCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGt < 2:31546/151‑1 (MQ=255) cGGAAGAAATAATGAAAGCGTGTCCCTTG‑ACCCAAATACAAAATTTTC‑AACACACTAATCTACACGAA‑TTTGTTTTGCACCCTAAAAAACCG‑GA‑A‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGt < 2:881907/151‑1 (MQ=255) gggAGAAATAATGAAAGCGTGCCCCTTG‑ACAAGAATAAAAAATTTTC‑AACACCCTTTTCTACCCAAT‑TTTGGTTTGCACCCGAAAAACCCG‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGt < 2:539092/150‑1 (MQ=255) ggaaaaaaTAATAAAGGCGTTTCCCTTG‑ACAAAAATAAAAATTTTAA‑AACACATTTATCTACACAAT‑TTTGTTTTCCACCCAAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGt < 2:757840/145‑1 (MQ=255) ggAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGt > 1:1037809/1‑149 (MQ=255) ggAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTCTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGt > 1:1019820/1‑149 (MQ=255) taataaAAGCGTGTCCCTTG‑ACACAAATAAAAAATTTCC‑AACCCCCTTATCTACTCGAT‑TTTGGTTTGCACCCAAAAAAACCA‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc < 1:323529/151‑1 (MQ=255) taatGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa > 1:232297/1‑150 (MQ=255) atGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACg > 1:438909/1‑150 (MQ=255) atGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACg > 1:793398/1‑150 (MQ=255) aaaaaaGCGTGTCCCTTG‑ACACAAATAAAAATTTTTC‑AACACTTTTATCTCCTCGAA‑TTTGGCTTGCACCCGAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGc < 1:299592/148‑1 (MQ=255) aGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTa > 2:445955/1‑151 (MQ=255) aGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTa > 2:358548/1‑151 (MQ=255) tttCCCTGG‑ACACAAAAAAAAAATTTAC‑AACACACTTATCAACACAAT‑TTTGGCTTCCATCCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc < 2:1114064/148‑1 (MQ=255) ttccccTTG‑ACACAAATAAAAAATTTTC‑AACACACTTATCTCCTCGAT‑TTTGGCTTGCACCCGAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc < 1:90004/147‑1 (MQ=255) ttccccTTG‑ACACAAATAAAAAATTTCC‑AACACATTTATCTCCTCGAT‑TTTGGCTTGCACCCGAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc < 1:935411/147‑1 (MQ=255) tctCCCTTG‑ACAAGAATAAAAAATTTAC‑AACACTCTTATCTACTCAAA‑TTTGGCTTGAATCCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc < 2:569717/148‑1 (MQ=255) ccTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCGATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTc < 2:43779/151‑1 (MQ=255) ccTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAAtt > 2:1134343/1‑150 (MQ=255) cacGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGt > 2:611621/1‑151 (MQ=255) caaaTAAAAAATTTTC‑AACACACTTATCCACTCAAT‑TTTGGCTTGCACCCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAg < 1:976563/149‑1 (MQ=255) gaaaaaaaaaTTTTCAAAAAAACTTTTCTTCCCAAT‑TTTGGCTAGCAACCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATg < 1:1230147/142‑1 (MQ=255) aaaaaaaaaTTTCC‑AACCCACTTATCTAATCAAT‑TTGGGCTTGCACCCGAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTg < 2:660524/146‑1 (MQ=255) aTACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGa > 2:627323/1‑151 (MQ=255) aCAAATTTTTC‑AACACCCTTATCTACTAAAT‑TTTGGTTTACATCCGAAAAAACAA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGAtt < 1:740331/151‑1 (MQ=255) atttttA‑AACACTTTTATCTCCTCAAA‑TTTGGCTTCCCCCCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCAt < 1:1262325/149‑1 (MQ=255) aatatac‑AACACTCTTATCTACAAAAT‑TTTGGTTTCCCTCCGCAAAAACCC‑GG‑T‑T‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCAt < 2:165515/145‑1 (MQ=255) aaTTTAC‑AACACCCTTATCTACTCAAT‑TTTGCTTTGCACCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCAt < 2:462694/151‑1 (MQ=255) aTTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATa > 2:378606/1‑151 (MQ=255) tttcC‑AACACCCTTATCTACTCAAT‑TTTGGCTTGCATCCG‑AAAAACCA‑GGTT‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAA‑TAGACAATTCCCATGTAGTGATTGCATAGt < 1:1137716/151‑1 (MQ=255) tttC‑AACACCCTAATCTACTCAAT‑TTTGGTTTGCACCCAAAAAAACCG‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt < 1:627614/151‑1 (MQ=255) tttC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt > 2:757903/1‑151 (MQ=255) ccacTTATCTACTAGAA‑TTTGGCTTGCACCCGAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATGGTTGACTTa < 2:580070/150‑1 (MQ=255) cacTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTaa > 2:532064/1‑151 (MQ=255) cacTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTaa > 1:1030003/1‑151 (MQ=255) cacTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTaa > 2:460040/1‑151 (MQ=255) ttttctatccGAA‑TTGGGTTTGAACCCACAAAACCCG‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat < 2:909675/142‑1 (MQ=255) ttATCTCCTCAAA‑TTTGGCTTGCACCCAAAAAAACCA‑GC‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat < 1:90384/151‑1 (MQ=255) tctcctgaaa‑TTTGCCTTCCCCCCGAAAAACCCA‑GT‑A‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTAc < 1:1023929/143‑1 (MQ=255) nnan‑TTTGGCTTCCACCCAAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAAc < 1:512334/149‑1 (MQ=255) caattttGGTTTCCATCCGAAAAACCCA‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAAc < 1:92407/147‑1 (MQ=255) aa‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACat > 2:250134/1‑151 (MQ=255) attttGGCTTGCACCAAAAAAACCCG‑GG‑T‑A‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACat < 2:481362/149‑1 (MQ=255) gtttGCATCC‑CAAAAACCAGGG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTAc < 1:233771/148‑1 (MQ=255) gCTTGAATCCGCAAAACCAA‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTAc < 1:204938/150‑1 (MQ=255) gCTTCCACCCGAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTAc < 1:478569/150‑1 (MQ=255) cTTACACCCGCAAAAACCT‑GC‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTg < 1:625446/151‑1 (MQ=255) | CTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTG > NC_000913/3665548‑3665842 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |