New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4199344	50 (0.990)	6 (0.120)	4/282	5.5	10.8%	coding (555/672 nt)	nfi	endonuclease V; deoxyinosine 3' endonuclease
	?	NC_000913	= 4199393	51 (1.060)					coding (604/672 nt)	nfi	endonuclease V; deoxyinosine 3' endonuclease
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

GGATAAAGGCGAGCAGCTGGCCTGGGTCTGGCGCAGCAAAGCGCGCTGTAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGGAG  >  NC_000913/4199248‑4199536                                                                                                                                                  |                                                                                                                                                ggATAAAGGCGAGCAGCTGGCCTGGGTCTGGCGCAGCAAAGCGCGCTGTAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAAcgcg                                                                                                                                             >  1:544570/1‑150 (MQ=255)          cGAGCAGCTGGCCTGGGTCTGGCGTAGCAAAGCGCGCTGTAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGa                                                                                                                                    <  1:290357/150‑1 (MQ=255)            agcagcTGGCCTGGGTCTGGCGCAGCAAAGCGCGCTGTAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGAcg                                                                                                                                  <  2:786559/150‑1 (MQ=255)              cagcTGGCCTGGGTCTGGCGCAGCAAAGCGCGCTGTAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCgg                                                                                                                               >  1:446946/1‑151 (MQ=255)                          gTCTGGCGCAGCAAAGCGCGCTGTACCCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGaa                                                                                                                    <  1:375459/150‑1 (MQ=255)                           tCTGGCGCAGCAAAGCGCGCTGTAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACg                                                                                                                  <  2:648292/151‑1 (MQ=255)                            cTGGCGCAGCAAAGCGCGCTGTAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGctccggcagac                                                                                                                 <  2:411246/151‑11 (MQ=255)                             tGGTGCGGCAAAACGCGCTGTAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTCGACAGCGCGCTGGCGTGGGTACAACGCTGGATGAACTGCAACCGTCTGCCGTAGCCAACGAGCTGGGCGGACCGGGTGGACTCGGaaggca                                                                                                                >  1:458623/1‑147 (MQ=255)                               gcgcAGCAAAGCGCGCTGTAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTcc                                                                                                               <  1:492073/150‑1 (MQ=255)                                cgcAGCAAAGCGCGCTGTAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTTGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCgg                                                                                                             <  2:141879/151‑1 (MQ=255)                                cgcAGCAAAGCGCGCTGTAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCgg                                                                                                             <  2:659894/151‑1 (MQ=255)                                            cgcTGTAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTgcg                                                                                                   >  1:167171/1‑149 (MQ=255)                                             gcTGTAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCta                                                                                                >  1:385778/1‑151 (MQ=255)                                              cTGTAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCtat                                                                                               >  1:50018/1‑151 (MQ=255)                                                gTAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCtata                                                                                              >  2:598611/1‑150 (MQ=255)                                                 tAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATAc                                                                                             <  1:737492/150‑1 (MQ=255)                                                 tAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATAc                                                                                             <  2:598261/150‑1 (MQ=255)                                                 tAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATAc                                                                                             <  2:628942/150‑1 (MQ=255)                                                   aCCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTGTCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGc                                                                                          <  1:290216/151‑1 (MQ=255)                                                   aCCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGGCGCGGAGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAg                                                                                           >  1:124844/1‑150 (MQ=255)                                                   aCCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGc                                                                                          <  1:732200/151‑1 (MQ=255)                                                   aCCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGc                                                                                          <  1:425174/151‑1 (MQ=255)                                                     ccGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCaa                                                                                        <  1:304051/151‑1 (MQ=255)                                                     ccGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCaa                                                                                        <  1:369313/151‑1 (MQ=255)                                                     ccGGTGTTTATCGCGATCGGCAATCGGGTCGGCGTGGACAGCGCGCGGGCGTGGGTGCAACGCTGCATGAAAGGCTTTCGTCTGCCAGAGCCAACGCGCTAGGCGGACGCGGTTGCCACGGAACGTCCGGCGTTCGTGCGCGATACCGcta                                                                                        <  1:444199/151‑3 (MQ=255)                                                             tATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGccc                                                                                <  2:368248/151‑1 (MQ=255)                                                                   tACCGGCCTGCGGGTCAGCGTGGACAGCGCGCTGTCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTc                                                                          <  1:449837/151‑1 (MQ=255)                                                                   tACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTc                                                                          <  1:543405/151‑1 (MQ=255)                                                                      cGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAgg                                                                       <  1:426258/151‑1 (MQ=255)                                                                        gCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTa                                                                     >  1:319050/1‑151 (MQ=255)                                                                         ccATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTaa                                                                    >  2:435811/1‑151 (MQ=255)                                                                             cGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTg                                                                <  2:31122/151‑1 (MQ=255)                                                                                  cAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGAt                                                           >  1:750859/1‑151 (MQ=255)                                                                                  cAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGAt                                                           >  2:164354/1‑151 (MQ=255)                                                                                      gTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAAtt                                                       >  1:166185/1‑151 (MQ=255)                                                                                              cgcgcTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTa                                                 <  1:38022/149‑1 (MQ=255)                                                                                                    ggCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGaa                                         >  1:674132/1‑151 (MQ=255)                                                                                                         gggTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCaa                                    >  2:111793/1‑151 (MQ=255)                                                                                                         gggTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCaa                                    >  2:521459/1‑151 (MQ=255)                                                                                                          ggTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCaa                                    >  1:463157/1‑150 (MQ=255)                                                                                                           gTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACa                                  >  2:34792/1‑151 (MQ=255)                                                                                                           gTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACa                                  >  1:69753/1‑151 (MQ=255)                                                                                                             aCAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATg                                <  1:484717/151‑1 (MQ=255)                                                                                                                     gCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACaaaa                        >  2:24697/1‑151 (MQ=255)                                                                                                                     gCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACaaaa                        >  2:602152/1‑151 (MQ=255)                                                                                                                     gCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACaaaa                        >  2:686631/1‑151 (MQ=255)                                                                                                                        tGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATCCAGCAAAGCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAAccc                     <  1:556581/151‑1 (MQ=255)                                                                                                                             ggCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAAtt                 >  1:227567/1‑150 (MQ=255)                                                                                                                              gCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTc                <  2:776737/150‑1 (MQ=255)                                                                                                                                  tCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTg           <  2:268184/151‑1 (MQ=255)                                                                                                                                   cGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTg           >  2:220599/1‑150 (MQ=255)                                                                                                                                            gAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGGAg  <  1:111773/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                GGATAAAGGCGAGCAGCTGGCCTGGGTCTGGCGCAGCAAAGCGCGCTGTAACCCGTTGTTTATCGCTACCGGCCATCGGGTCAGCGTGGACAGCGCGCTGGCGTGGGTACAACGCTGCATGAAAGGCTATCGTCTGCCGGAGCCAACGCGCTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGGAG  >  NC_000913/4199248‑4199536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.